WormBase Tree Display for Gene: WBGene00009886

WBGene00009886 SMap: S_parent: Sequence: F49E2
  Identity: Version: 1
    Name: Sequence_name: F49E2.2
      Molecular_name: F49E2.2a
        F49E2.2a.1
        CE31527
        F49E2.2c
        CE23752
        F49E2.2a.2
        F49E2.2a.3
        F49E2.2a.4
        F49E2.2c.1
      Other_name: CELE_F49E2.2 Accession_evidence: NDB BX284606
      Public_name: F49E2.2
    DB_info: Database: AceView gene XK191
        WormQTL gene WBGene00009886
        SignaLink protein WBGene00009886
        WormFlux gene WBGene00009886
        NDB locus_tag CELE_F49E2.2
        NCBI gene 181177
        RefSeq protein NM_001392825.1
            NM_001129675.5
        TrEMBL UniProtAcc Q20621
            A6ZJ46
        UniProt_GCRP UniProtAcc A6ZJ46
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01945843
      WBVar00099571
      WBVar01945844
      WBVar01551133
      WBVar02027267
      WBVar01551134
      WBVar01551135
      WBVar01551136
      WBVar01551137
      WBVar01619774
      WBVar01619775
      WBVar01619776
      WBVar01488713
      WBVar02151847
      WBVar01175043
      WBVar01175044
      WBVar01175045
      WBVar01500130
      WBVar01175046
      WBVar01175047
      WBVar01500131
      WBVar01175048
      WBVar00513180
      WBVar00513181
      WBVar01175049
      WBVar00513182
      WBVar01175050
      WBVar00513183
      WBVar01175051
      WBVar00513184
      WBVar01175052
      WBVar00513185
      WBVar01175053
      WBVar00513186
      WBVar01175054
      WBVar01175055
      WBVar00513187
      WBVar01175056
      WBVar00513188
      WBVar01175057
      WBVar00513189
      WBVar00513190
      WBVar01175058
      WBVar01175059
      WBVar00513191
      WBVar01175060
      WBVar00513192
      WBVar00513193
      WBVar01175061
      WBVar01175062
      WBVar00257519
      WBVar00513194
      WBVar01175063
      WBVar00513195
      WBVar01499963
      WBVar00513196
      WBVar01175064
      WBVar00513197
      WBVar01175065
      WBVar01175066
      WBVar01175067
      WBVar01175068
      WBVar01175069
      WBVar01175070
      WBVar01175071
      WBVar01175072
      WBVar01175073
      WBVar01175074
      WBVar01175075
      WBVar02139879
      WBVar01175076
      WBVar01175077
      WBVar01175078
      WBVar02069021
      WBVar01175079
      WBVar01175080
      WBVar01175081
      WBVar01175082
      WBVar01175083
      WBVar00053897
      WBVar01175084
      WBVar01175085
      WBVar01175086
      WBVar01175087
      WBVar01175088
      WBVar01175089
      WBVar01175090
      WBVar01816665
      WBVar01175091
      WBVar01816666
      WBVar01175092
      WBVar02065689
      WBVar01887633
      WBVar01887634
      WBVar01887635
      WBVar01887636
      WBVar01887637
      WBVar01887638
      WBVar01887639
      WBVar01887640
      WBVar01758920
      WBVar01499642
      WBVar01487497
      WBVar01758921
      WBVar01693667
      WBVar01470529
      WBVar00276639
      WBVar00276640
      WBVar02120744
      WBVar01897699
      WBVar01897700
      WBVar01690195
      WBVar01987486
      WBVar01987487
      WBVar01987488
      WBVar01987489
      WBVar01498960
      WBVar01500067
    RNASeq_FPKM (74)
    Ortholog: WBGene00036146 Caenorhabditis briggsae Person_evidence: WBPerson1971
          From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00059765 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00153005 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00138209 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g3978 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12504 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g1441 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g21558 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9435 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g15348 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7102 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5455 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10605 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4749 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-F49E2.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13467 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00008.g594 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02217 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023323 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07528 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_X0056500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19762 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00280688 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in several structures, including gonad; mechanosensory neurons; rectal epithelial cell; rectum; and somatic gonad precursor based on microarray; tiling array; RNA-seq; proteomic; and single-cell RNA-seq studies. Is affected by several genes including skn-1; glp-1; and dpy-10 based on RNA-seq; proteomic; and microarray studies. Is affected by thirteen chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SH3 domain; Phosphorylation site; and SH3-like domain superfamily. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F49E2.2a
      F49E2.2c
    Corresponding_CDS_history: F49E2.2:wp83
      F49E2.2b:wp271
    Corresponding_transcript (5)
    Other_sequence: ES409587.1
      CR03260
      HBC02261_1
      Hbac_isotig04025
      CRC06179_1
      Acan_isotig08913
      Dviv_isotig25164
      Oden_contig24378
      CJC06859_1
      CRC09473_1
    Associated_feature: WBsf663180
      WBsf663181
      WBsf1006475
      WBsf1006476
      WBsf236179
      WBsf236180
      WBsf236181
      WBsf236182
  Experimental_info: RNAi_result: WBRNAi00015326 Inferred_automatically: RNAi_primary
      WBRNAi00047862 Inferred_automatically: RNAi_primary
      WBRNAi00032545 Inferred_automatically: RNAi_primary
      WBRNAi00015327 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011257
      Expr1034311
      Expr1151693
      Expr2003942
      Expr2022164
    Drives_construct: WBCnstr00031843
    Construct_product: WBCnstr00031843
    Microarray_results (29)
    Expression_cluster (165)
    Interaction (39)
  Map_info: Positive: Positive_clone: F49E2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X 1.4213
  Method: Gene