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WormBase Tree Display for Variation: WBVar00053897

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Name Class

WBVar00053897EvidencePaper_evidenceWBPaper00005369
NamePublic_nameWBVar00053897
Other_nameCE6-214
haw106333
cewivar00275382
CE23752:p.Thr118=
F49E2.2a.3:c.192T>A
F49E2.2c.1:c.354T>A
F49E2.2a.1:c.192T>A
CE31527:p.Thr64=
F49E2.2a.4:c.192T>A
F49E2.2a.2:c.192T>A
HGVSgCHROMOSOME_X:g.9570275T>A
Sequence_detailsSMapS_parentSequenceF49E2
Flanking_sequencestgtagttgaaagacgcattcatagaactcgagttttatattttcatagtttgtgcctaaaaattcaatgacaaaaactatattttttgtgagagtggaaattgaaacattttcgtttgcaatccatatcaatgtaggtcaagaaaaatagcttttcaataatcacatcaagttttcaagatgacaagagtatataaaaatttgcaattttcagtgttccaagaagcattgtcaaactattgtgatgccaccacaaacttatcaaatcagctgatactgctggacacaaatcgaaaaatgaagctcgagagctttcaaaagtttttaaagagtttgtacagggagtaaatgctcatcaaaaagtcgtaagcatcaatctaaagaaaagtttcgcattcaatatataattaaacatagattacggaatttgacgcgctggcacacaaagttcatgactatagcaacaaggaaaaagacaagctgaagacagaatttgctgag
Mapping_targetF49E2
Type_of_mutationSubstitutionta
SeqStatusSequenced
Variation_typeSNP
Confirmed_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Swan
WGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
LaboratoryRW
PersonWBPerson1562
AnalysisSNP_Swan
Million_mutation_project_reanalysis
WGS_Hawaiian_Waterston
HistoryAcquires_mergeWBVar00081973
StatusLive
AffectsGeneWBGene00009886
TranscriptF49E2.2c.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF49E2.2c.1:c.354T>A
HGVSpCE23752:p.Thr118=
cDNA_position354
CDS_position354
Protein_position118
Exon_number4/12
Codon_changeacT/acA
Amino_acid_changeT
F49E2.2a.2VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF49E2.2a.2:c.192T>A
HGVSpCE31527:p.Thr64=
cDNA_position339
CDS_position192
Protein_position64
Exon_number6/15
Codon_changeacT/acA
Amino_acid_changeT
F49E2.2a.4VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF49E2.2a.4:c.192T>A
HGVSpCE31527:p.Thr64=
cDNA_position398
CDS_position192
Protein_position64
Exon_number5/14
Codon_changeacT/acA
Amino_acid_changeT
F49E2.2a.3VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF49E2.2a.3:c.192T>A
HGVSpCE31527:p.Thr64=
cDNA_position294
CDS_position192
Protein_position64
Exon_number5/14
Codon_changeacT/acA
Amino_acid_changeT
F49E2.2a.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScF49E2.2a.1:c.192T>A
HGVSpCE31527:p.Thr64=
cDNA_position221
CDS_position192
Protein_position64
Exon_number4/13
Codon_changeacT/acA
Amino_acid_changeT
ReferenceWBPaper00005369
MethodSNP_Swan