WormBase Tree Display for Variation: WBVar00053897
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WBVar00053897 | Evidence | Paper_evidence | WBPaper00005369 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00053897 | |||
Other_name | CE6-214 | ||||
haw106333 | |||||
cewivar00275382 | |||||
CE23752:p.Thr118= | |||||
F49E2.2a.3:c.192T>A | |||||
F49E2.2c.1:c.354T>A | |||||
F49E2.2a.1:c.192T>A | |||||
CE31527:p.Thr64= | |||||
F49E2.2a.4:c.192T>A | |||||
F49E2.2a.2:c.192T>A | |||||
HGVSg | CHROMOSOME_X:g.9570275T>A | ||||
Sequence_details | SMap | S_parent | Sequence | F49E2 | |
Flanking_sequences | tgtagttgaaagacgcattcatagaactcgagttttatattttcatagtttgtgcctaaaaattcaatgacaaaaactatattttttgtgagagtggaaattgaaacattttcgtttgcaatccatatcaatgtaggtcaagaaaaatagcttttcaataatcacatcaagttttcaagatgacaagagtatataaaaatttgcaattttcagtgttccaagaagcattgtcaaactattgtgatgccac | cacaaacttatcaaatcagctgatactgctggacacaaatcgaaaaatgaagctcgagagctttcaaaagtttttaaagagtttgtacagggagtaaatgctcatcaaaaagtcgtaagcatcaatctaaagaaaagtttcgcattcaatatataattaaacatagattacggaatttgacgcgctggcacacaaagttcatgactatagcaacaaggaaaaagacaagctgaagacagaatttgctgag | |||
Mapping_target | F49E2 | ||||
Type_of_mutation | Substitution | t | a | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Confirmed_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
Person | WBPerson1562 | ||||
Analysis | SNP_Swan | ||||
Million_mutation_project_reanalysis | |||||
WGS_Hawaiian_Waterston | |||||
History | Acquires_merge | WBVar00081973 | |||
Status | Live | ||||
Affects | Gene | WBGene00009886 | |||
Transcript | F49E2.2c.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F49E2.2c.1:c.354T>A | ||||
HGVSp | CE23752:p.Thr118= | ||||
cDNA_position | 354 | ||||
CDS_position | 354 | ||||
Protein_position | 118 | ||||
Exon_number | 4/12 | ||||
Codon_change | acT/acA | ||||
Amino_acid_change | T | ||||
F49E2.2a.2 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F49E2.2a.2:c.192T>A | ||||
HGVSp | CE31527:p.Thr64= | ||||
cDNA_position | 339 | ||||
CDS_position | 192 | ||||
Protein_position | 64 | ||||
Exon_number | 6/15 | ||||
Codon_change | acT/acA | ||||
Amino_acid_change | T | ||||
F49E2.2a.4 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F49E2.2a.4:c.192T>A | ||||
HGVSp | CE31527:p.Thr64= | ||||
cDNA_position | 398 | ||||
CDS_position | 192 | ||||
Protein_position | 64 | ||||
Exon_number | 5/14 | ||||
Codon_change | acT/acA | ||||
Amino_acid_change | T | ||||
F49E2.2a.3 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F49E2.2a.3:c.192T>A | ||||
HGVSp | CE31527:p.Thr64= | ||||
cDNA_position | 294 | ||||
CDS_position | 192 | ||||
Protein_position | 64 | ||||
Exon_number | 5/14 | ||||
Codon_change | acT/acA | ||||
Amino_acid_change | T | ||||
F49E2.2a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F49E2.2a.1:c.192T>A | ||||
HGVSp | CE31527:p.Thr64= | ||||
cDNA_position | 221 | ||||
CDS_position | 192 | ||||
Protein_position | 64 | ||||
Exon_number | 4/13 | ||||
Codon_change | acT/acA | ||||
Amino_acid_change | T | ||||
Reference | WBPaper00005369 | ||||
Method | SNP_Swan |