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WormBase Tree Display for Gene: WBGene00005023

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Name Class

WBGene00005023EvidencePaper_evidenceWBPaper00005867
SMapS_parentSequenceT24D1
IdentityVersion2
NameCGC_namesqv-5Person_evidenceWBPerson268
Sequence_nameT24D1.1
Molecular_nameT24D1.1a
T24D1.1a.1
CE50401
T24D1.1b
CE39182
T24D1.1c
CE50402
T24D1.1b.1
T24D1.1c.1
Other_nameChSy-SAccession_evidenceEMBLAB088398
CELE_T24D1.1Accession_evidenceNDBBX284601
Public_namesqv-5
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:37WBPerson1971EventImportedInitial conversion from geneace
202 Mar 2018 11:09:16WBPerson4025EventSplit_intoWBGene00303082
Split_intoWBGene00303082
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsqv
AlleleWBVar00156341
WBVar00156342
WBVar01694848
WBVar01499739
WBVar00090647
WBVar01914710
WBVar00538794
WBVar00249585
WBVar01490389
WBVar00088213
WBVar00088216
WBVar01499045
WBVar01499786
WBVar01499054
WBVar00090727
WBVar00277342
WBVar00343021
WBVar00343022
WBVar00343023
WBVar00343024
WBVar00343025
WBVar00343026
WBVar00343027
WBVar00343028
WBVar00343029
WBVar00343030
WBVar00343031
WBVar02088697
WBVar00663841
WBVar02128288
WBVar00663842
WBVar00663843
WBVar00663844
WBVar00663845
WBVar00663846
WBVar00663847
WBVar00663848
WBVar00663849
WBVar00663850
WBVar00663851
WBVar00663852
WBVar00663853
WBVar00663854
WBVar00663855
WBVar00663856
WBVar00663857
WBVar00663858
WBVar00663859
WBVar00663860
WBVar00663861
WBVar00663862
WBVar01492696
WBVar01498959
Legacy_information[Herman T] sqv for squashed vulva. morphology of L4 vulva abnormal (invagination considerably reduced). hermaphrodites self-sterile.
[C.elegansII] n3039 : morphology of L4 vulva abnormal (invagination considerably reduced); hermaphrodites self-sterile. [MT]
StrainWBStrain00027364
WBStrain00027385
WBStrain00028700
WBStrain00028702
WBStrain00007564
RNASeq_FPKM (74)
GO_annotation (21)
OrthologWBGene00026608Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00162374Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00147520Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00079920Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00119339Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00226246Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12354Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g14374Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g5814Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7301Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7840Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4519Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26846Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g8149Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g9511Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g18676Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5860Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20236Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00560.g12242Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-sqv-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14792Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14803Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00070.g3288Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_21888Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_23088Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000692Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05998Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g19846Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10188310Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1937Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00248563Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00273992Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00260231Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288787Trichuris murisFrom_analysisWormBase-Compara
WBGene00297444Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0030662Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-3127Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030616-4Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:17198Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:24293Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1926173Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2681120Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1560819Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1311904Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00003253Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionsqv-5 encodes a chondroitin synthase that both initiates and elongates chondroitin chains (unlike human chondroitin synthase, which only elongates them); SQV-5 is required for cytokinesis (e.g., at the one-cell embryo stage), gonad migration, and vulval morphogenesis (by expanding the extracellular space of the vulva in L4 larvae); the common requirement for SQV-5 in both processes may be to promote filling an extracellular space with fluid (either in the eggshell, or underneath the L4 cuticle); SQV-5 colocalizes with SQV-1 at punctate foci (probably the Golgi apparatus) in the cytoplasm of the vulva, the uterus and oocytes; SQV-5 is most similar to human chondroitin synthase (KIAA0990) and Drosophila CG9220.Paper_evidenceWBPaper00003405
WBPaper00003736
WBPaper00003906
WBPaper00005540
WBPaper00005867
WBPaper00005868
WBPaper00012887
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables enzyme binding activity. Involved in several processes, including egg-laying behavior; positive regulation of vulval development; and vulval development. Located in cytoplasm. Expressed in oocyte; uterus; and vulva. Human ortholog(s) of this gene implicated in temtamy preaxial brachydactyly syndrome. Is an ortholog of human CHSY1 (chondroitin sulfate synthase 1) and CHSY3 (chondroitin sulfate synthase 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0050814Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:17198)
Molecular_infoCorresponding_CDST24D1.1a
T24D1.1b
T24D1.1c
Corresponding_CDS_historyT24D1.1a:wp149
T24D1.1a:wp246
T24D1.1b:wp149
T24D1.1d:wp264
Corresponding_transcriptT24D1.1a.1
T24D1.1b.1
T24D1.1c.1
Other_sequence (32)
Associated_feature (14)
Experimental_infoRNAi_result (14)
Expr_patternExpr2566
Expr3104
Expr1023591
Expr1032506
Expr1157585
Expr2016123
Expr2034358
Drives_constructWBCnstr00018534
WBCnstr00035261
Construct_productWBCnstr00018534
WBCnstr00035261
AntibodyWBAntibody00000621
WBAntibody00001858
Microarray_results (29)
Expression_cluster (160)
Interaction (66)
Map_infoMapIPosition4.09354Error0.007416
PositivePositive_cloneT24D1Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point3143
3144
5407
5544
Reference (32)
MethodGene