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WormBase Tree Display for Gene: WBGene00001955

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Name Class

WBGene00001955EvidenceCGC_data_submission
SMapS_parentSequenceF58A4
IdentityVersion1
NameCGC_namehlh-11Person_evidenceWBPerson346
Sequence_nameF58A4.7
Molecular_name (14)
Other_nameCELE_F58A4.7Accession_evidenceNDBBX284603
Public_namehlh-11
DB_infoDatabaseAceViewgene3K715
WormQTLgeneWBGene00001955
WormFluxgeneWBGene00001955
NDBlocus_tagCELE_F58A4.7
PanthergeneCAEEL|WormBase=WBGene00001955|UniProtKB=P34474
familyPTHR15741
NCBIgene176360
RefSeqproteinNM_001379865.2
NM_066728.8
NM_066729.10
SwissProtUniProtAccP34474
TREEFAMTREEFAM_IDTF316489
UniProt_GCRPUniProtAccP34474
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhlh
AlleleWBVar01480197
WBVar00094033
WBVar01500260
WBVar00245214
WBVar00178080
WBVar00178081
WBVar00405706
WBVar00405707
WBVar00405708
WBVar00405709
WBVar00405710
WBVar00405711
WBVar00405712
WBVar00405713
WBVar01952516
WBVar01952517
WBVar01952518
WBVar01983993
WBVar01499774
WBVar02072356
WBVar01723194
WBVar01723195
WBVar01723196
WBVar01995648
WBVar01723197
WBVar01723198
WBVar02019039
WBVar02019040
WBVar01990377
WBVar00851508
WBVar00851509
WBVar00851510
WBVar00851511
WBVar00851512
WBVar00851513
WBVar00851514
WBVar00851515
WBVar00851516
WBVar00851517
WBVar00851518
WBVar00851519
WBVar00851520
WBVar00851521
WBVar00851522
WBVar00851523
WBVar00851524
WBVar00851525
WBVar00851526
WBVar01447631
WBVar00851527
WBVar01447633
WBVar00851528
WBVar00851529
WBVar00851530
WBVar00851531
WBVar01629499
WBVar00851532
WBVar00851533
WBVar00851534
WBVar00851535
WBVar00851536
WBVar00851537
WBVar00851538
WBVar00851539
WBVar00851540
WBVar00851541
WBVar00851542
WBVar00851543
WBVar00851544
WBVar00851545
WBVar00851546
WBVar00851547
WBVar00851548
WBVar00851549
WBVar00851550
WBVar00851551
WBVar00257959
WBVar00851552
WBVar00851553
WBVar00851554
WBVar00851555
WBVar00851556
WBVar00100927
WBVar01831335
WBVar01785750
WBVar01645904
WBVar01645905
WBVar01645906
WBVar01645907
WBVar01489026
StrainWBStrain00032859
WBStrain00030583
RNASeq_FPKM (74)
GO_annotation00042552
00042553
00042554
00042555
00042556
00042557
00042558
00109807
Ortholog (29)
ParalogWBGene00003510Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00003378Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including excretory cell; intestinal cell; male-specific anatomical entity; non-striated muscle; and somatic nervous system. Is an ortholog of human TFAP4 (transcription factor AP-4).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF58A4.7a
F58A4.7b
F58A4.7d
Corresponding_CDS_historyF58A4.7a:wp88
F58A4.7b:wp88
F58A4.7c:wp275
Corresponding_transcriptF58A4.7a.1
F58A4.7a.2
F58A4.7b.1
F58A4.7b.2
F58A4.7b.3
F58A4.7b.4
F58A4.7d.1
F58A4.7d.2
Other_sequence (26)
Associated_feature (16)
Transcription_factorWBTranscriptionFactor000068
Experimental_infoRNAi_resultWBRNAi00106987Inferred_automaticallyRNAi_primary
WBRNAi00048934Inferred_automaticallyRNAi_primary
WBRNAi00115659Inferred_automaticallyRNAi_primary
WBRNAi00033064Inferred_automaticallyRNAi_primary
WBRNAi00015934Inferred_automaticallyRNAi_primary
WBRNAi00005984Inferred_automaticallyRNAi_primary
WBRNAi00001428Inferred_automaticallyRNAi_primary
WBRNAi00087728Inferred_automaticallyRNAi_primary
Expr_patternExpr12824
Expr15663
Expr15976
Expr1012609
Expr1031137
Expr1152672
Expr1200145
Expr2012491
Expr2030730
Drives_constructWBCnstr00016793
WBCnstr00018615
WBCnstr00022887
WBCnstr00022888
WBCnstr00036563
WBCnstr00042427
Construct_productWBCnstr00016793
WBCnstr00016890
WBCnstr00017353
WBCnstr00022888
WBCnstr00036563
WBCnstr00042427
Regulate_expr_clusterWBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060683:hlh-11(overexpression)_downregulated
WBPaper00060683:hlh-11(overexpression)_upregulated
Microarray_resultsSMD_F58A4.7
SMD_F58A4.7:2
171841_x_at
174449_at
192781_s_at
A_12_P101299
A_12_P111541
A_12_P158075
Aff_F58A4.7
GPL13394_WBGene00001955
GPL13914_F58A4.7
GPL14144_F58A4.7b_1189-1248_0.948_1_C
GPL14144_F58A4.7b_336-395_0.847_50_B
GPL14144_F58A4.7b_398-457_0.883_23_A
GPL19516_CGZ0025124
GPL19516_CGZ0025125
GPL19516_CGZ0025126
GPL19516_CGZ0025127
GPL19516_CGZ0025128
GPL21109_F58A4.7a
GPL21109_F58A4.7d
GPL3518_CE32194
GPL8304_CE_WBGene00001955_A
GPL8304_CE_WBGene00001955_B
GPL8673_F58A4_7aP00235
GPL8673_F58A4_7aP00351
GPL8673_F58A4_7aP01073
GPL8673_F58A4_7bP00235
GPL8673_F58A4_7bP00356
GPL8673_F58A4_7bP01079
GPL8673_F58A4_7cP00235
GPL8673_F58A4_7cP00351
GPL8673_F58A4_7cP01073
GPL8673_F58A4_7dP00073
GPL8673_F58A4_7dP00235
GPL8673_F58A4_7dP00350
GPL9450_F58A4.7a
GPL9450_F58A4.7b
cea2.d.04175
cea2.d.30162
Expression_cluster (206)
Interaction (14)
Map_infoMapIIIPosition0.788189Error0.007563
PositivePositive_cloneF58A4Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Pseudo_map_position
Reference (12)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene