WormBase Tree Display for Gene: WBGene00000645

WBGene00000645 Evidence: Person_evidence: WBPerson345
      WBPerson651
  SMap: S_parent: Sequence: K01A2
  Identity: Version: 1
    Name: CGC_name: col-69 Person_evidence: WBPerson345
      Sequence_name: K01A2.7
      Molecular_name: K01A2.7
        K01A2.7.1
        CE19515
      Other_name: CELE_K01A2.7 Accession_evidence: NDB BX284602
      Public_name: col-69
    DB_info: Database: AceView gene 2A594
        WormQTL gene WBGene00000645
        WormFlux gene WBGene00000645
        NDB locus_tag CELE_K01A2.7
        Panther gene CAEEL|WormBase=WBGene00000645|UniProtKB=Q9TZ57
          family PTHR24637
        NCBI gene 186819
        RefSeq protein NM_061301.3
        TREEFAM TREEFAM_ID TF316414
        TrEMBL UniProtAcc Q9TZ57
        UniProt_GCRP UniProtAcc Q9TZ57
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    Allele: WBVar01499702
      WBVar02122083
      WBVar00009211
      WBVar00009216
      WBVar00009221
      WBVar01500106
      WBVar00698008
      WBVar00698009
      WBVar00698010
      WBVar00698011
      WBVar00698012
      WBVar00698013
      WBVar00698014
      WBVar00698015
      WBVar00698016
      WBVar00354554
      WBVar00698017
      WBVar00354555
      WBVar00354556
      WBVar00354557
      WBVar00354558
      WBVar00354559
      WBVar00354560
      WBVar02006441
      WBVar02098965
      WBVar01681822
      WBVar01681823
      WBVar01681824
      WBVar01681825
      WBVar01681826
      WBVar01681827
      WBVar01681828
      WBVar01681829
      WBVar01681830
      WBVar01681831
      WBVar01681832
      WBVar01681833
      WBVar01681834
      WBVar01681835
      WBVar01681836
      WBVar01681837
      WBVar01681838
      WBVar01681839
      WBVar01681840
      WBVar01681841
      WBVar01681842
      WBVar01681843
      WBVar01681844
      WBVar01681845
      WBVar01681846
      WBVar01681847
      WBVar01681848
      WBVar02148187
      WBVar01435283
      WBVar01435284
      WBVar00276844
      WBVar02122426
    RNASeq_FPKM (74)
    GO_annotation: 00097818
      00097819
      00097820
      00107644
    Ortholog (27)
    Paralog (161)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K01A2.7
    Corresponding_transcript: K01A2.7.1
    Other_sequence: CBC15886_1
      JI238260.1
      MH04976
      AA293989.1
      MH04975
    Associated_feature: WBsf649813
      WBsf222585
  Experimental_info: RNAi_result: WBRNAi00016373 Inferred_automatically: RNAi_primary
      WBRNAi00049591 Inferred_automatically: RNAi_primary
      WBRNAi00033807 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016778
      Expr1153320
      Expr2010417
      Expr2028658
    Microarray_results: SMD_K01A2.7
      189693_at
      A_12_P117656
      Aff_K01A2.7
      GPL13394_WBGene00000645
      GPL13914_K01A2.7
      GPL14144_K01A2.7_301-360_0.888_23_C
      GPL14144_K01A2.7_496-555_0.921_15_B
      GPL14144_K01A2.7_947-1006_0.958_3_A
      GPL19516_CGZ0027101
      GPL21109_K01A2.7
      GPL3518_CE19515
      GPL8304_CE_WBGene00000645_A
      GPL8673_K01A2_7P00108
      GPL8673_K01A2_7P00492
      GPL8673_K01A2_7P01008
      GPL9450_K01A2.7
      cea2.i.13609
    Expression_cluster (140)
    Interaction (33)
  Map_info: Map: II Position: -15.6349 Error: 0.002439
    Positive: Positive_clone: K01A2 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00065080
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene