WormBase Tree Display for Gene: WBGene00045434

WBGene00045434 SMap: S_parent: Sequence: Y95D11A
  Identity: Version: 1
    Name: Sequence_name: Y95D11A.3
      Molecular_name: Y95D11A.3
        Y95D11A.3.1
        CE46119
      Other_name: CELE_Y95D11A.3 Accession_evidence: NDB BX284601
      Public_name: Y95D11A.3
    DB_info: Database: AceView gene 1L533
        WormFlux gene WBGene00045434
        NDB locus_tag CELE_Y95D11A.3
        NCBI gene 6418593
        RefSeq protein NM_001129088.4
        TrEMBL UniProtAcc A5PEX9
        UniProt_GCRP UniProtAcc A5PEX9
    Species: Caenorhabditis elegans
    History: Version_change: 1 24 May 2007 09:48:49 WBPerson1983 Event: Created
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01947990
      WBVar01932427
      WBVar01932429
      WBVar01957664
      WBVar02093560
      WBVar01662930
      WBVar00317256
      WBVar00344960
      WBVar00344961
      WBVar00344962
      WBVar00344963
      WBVar00344964
      WBVar00344965
      WBVar00344966
      WBVar01889937
      WBVar01889938
      WBVar01499739
      WBVar00669640
      WBVar00669641
      WBVar00669642
      WBVar00669643
      WBVar00669644
      WBVar00669645
      WBVar01343834
      WBVar00669646
      WBVar01343845
      WBVar00669647
      WBVar00669648
      WBVar00669649
      WBVar01343856
      WBVar00669650
      WBVar02112367
      WBVar01343867
      WBVar00669651
      WBVar01343878
      WBVar02066371
      WBVar02083867
      WBVar01432920
      WBVar01432921
      WBVar01432923
      WBVar01284154
      WBVar01499054
      WBVar01284156
      WBVar01284157
      WBVar00539004
      WBVar00539005
      WBVar01403395
      WBVar00156652
      WBVar00156653
      WBVar00156654
      WBVar00156655
      WBVar00156656
      WBVar00156657
      WBVar00156658
      WBVar00156659
      WBVar00156660
      WBVar02014181
      WBVar01392048
      WBVar02045498
      WBVar01392049
      WBVar01392050
      WBVar01392051
      WBVar01392052
      WBVar02073725
      WBVar00233919
      WBVar00214417
      WBVar02001778
      WBVar02001779
      WBVar02001780
      WBVar01498959
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP1650
    Ortholog (16)
    Structured_description: Automated_description: Enriched in several structures, including ABalappaap; ABalppappa; ABalppppaa; ABalpppppa; and germ line based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including skn-1; sir-2.1; and pgl-1 based on RNA-seq and microarray studies. Is affected by seven chemicals including manganese chloride; Zidovudine; and Rifampin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y95D11A.3
    Corresponding_CDS_history: Y95D11A.3:wp227
    Corresponding_transcript: Y95D11A.3.1
    Other_sequence: CRC00221_1
      MI01017
      EH005460.1
      MJ04471
      CBC00503_1
      MJC04048_1
      CR08143
      AE02770
      CV200560.1
    Associated_feature: WBsf1010613
  Experimental_info: RNAi_result: WBRNAi00026993 Inferred_automatically: RNAi_primary
      WBRNAi00004868 Inferred_automatically: RNAi_primary
      WBRNAi00116204 Inferred_automatically: RNAi_primary
      WBRNAi00116222 Inferred_automatically: RNAi_primary
      WBRNAi00026992 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028924
      Expr1040372
      Expr1162093
      Expr2008522
      Expr2026760
    Microarray_results (12)
    Expression_cluster: WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Oogenic
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055941:atfs-1(et15)_downregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:ADL_parent
      WBPaper00061340:I2_grandparent
      WBPaper00061340:Neuroblast_ADF_AWB
      WBPaper00061340:Neuroblast_ASG_AWA
      WBPaper00061340:Neuroblast_BAG_SMDVx
      WBPaper00061340:Parent_of_exc_gland_AVK
      WBPaper00061340:PVQ_parent
      WBPaper00061340:RID_parent
      WBPaper00061340:RIM_parent
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064315:mes-4(bn73)_downregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065841:29_0
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00041606:CE_S.marcescens_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00056330:mrps-5(RNAi)_downregulated
      [cgc6390]:Cluster_E
      [cgc6390]:oogenesis-enriched
  Map_info: Positive: Positive_clone: Y95D11A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 6.15864
  Method: Gene