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WormBase Tree Display for Gene: WBGene00022022

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Name Class

WBGene00022022SMapS_parentSequenceY61A9LA
IdentityVersion2
NameCGC_nametxt-6Person_evidenceWBPerson19237
Sequence_nameY61A9LA.11
Molecular_nameY61A9LA.11a
Y61A9LA.11a.1
CE42439
Y61A9LA.11b
CE42268
Y61A9LA.11b.1
Other_nameCELE_Y61A9LA.11Accession_evidenceNDBBX284605
Public_nametxt-6
DB_infoDatabaseAceViewgene5F84
WormQTLgeneWBGene00022022
WormFluxgeneWBGene00022022
NDBlocus_tagCELE_Y61A9LA.11
PanthergeneCAEEL|WormBase=WBGene00022022|UniProtKB=B1GRJ8
familyPTHR38636
NCBIgene178850
RefSeqproteinNM_001129587.3
NM_001129588.4
TrEMBLUniProtAccH2L073
B1GRJ8
UniProt_GCRPUniProtAccB1GRJ8
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
228 Jan 2020 11:43:42WBPerson1983Name_changeCGC_nametxt-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtxt
AlleleWBVar01459502
WBVar01459503
WBVar01459504
WBVar01499528
WBVar01006662
WBVar00260964
WBVar01006663
WBVar01006664
WBVar01006665
WBVar01861203
WBVar01006666
WBVar01006667
WBVar01997626
WBVar01006668
WBVar01997627
WBVar01006669
WBVar01006670
WBVar01006671
WBVar01006672
WBVar01006673
WBVar01499740
WBVar00208420
WBVar00208421
WBVar00208422
WBVar00208423
WBVar01500129
WBVar00456506
WBVar00456507
WBVar00456508
WBVar00456509
WBVar00456510
WBVar00456511
WBVar00456512
WBVar00456513
WBVar01650678
WBVar01650679
WBVar01650680
WBVar01650681
WBVar01650682
WBVar01973129
WBVar01973130
WBVar01973131
WBVar01973132
WBVar01973133
WBVar01973134
WBVar01973135
WBVar02034570
WBVar02136253
WBVar02059841
WBVar01499496
WBVar02059842
WBVar02059843
WBVar01499316
WBVar02031924
WBVar01500066
RNASeq_FPKM (74)
Contained_in_operonCEOP5536
Ortholog (24)
ParalogWBGene00017887Caenorhabditis elegansFrom_analysisPanther
WBGene00017889Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionAutomated_descriptionEnriched in AFD; germ line; hypodermis; and intestine based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-2; pgl-1; and isp-1 based on microarray and RNA-seq studies. Is affected by eight chemicals including rotenone; bisphenol S; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1757) and Protein of unknown function DUF1757.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY61A9LA.11a
Y61A9LA.11b
Corresponding_CDS_historyY61A9LA.11:wp188
Corresponding_transcriptY61A9LA.11a.1
Y61A9LA.11b.1
Other_sequence (19)
Associated_featureWBsf1019522
WBsf233593
Experimental_infoRNAi_resultWBRNAi00021210Inferred_automaticallyRNAi_primary
WBRNAi00057828Inferred_automaticallyRNAi_primary
WBRNAi00116220Inferred_automaticallyRNAi_primary
WBRNAi00116202Inferred_automaticallyRNAi_primary
Expr_patternExpr1025003
Expr1039677
Expr1161263
Expr2008125
Expr2026364
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00035073:mitochondria_protein
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00048988:daf-2(e1370)_downregulated_neuron
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049954:BPS_downregulated
WBPaper00050015:ifg-1(RNAi)_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050193:cec-4(ok3124)_downregulated_L1
WBPaper00050344:AFD-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(ot269)_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060951:mrpl-2(osa3)_upregulated
WBPaper00061203:let-418(n3536)_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061341:28C_24h_downregulated
WBPaper00061527:mtr-4_1623-W03F9.10_103
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064716:paraquat_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00025032:cluster_86
WBPaper00025141:N2_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_H
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00045263:ProLongevity-mtROS_upregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:intrinsic
InteractionWBInteraction000585651
Map_infoPositivePositive_cloneY61A9LAInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV-4.94675
MethodGene