WormBase Tree Display for Gene: WBGene00021293

WBGene00021293 SMap: S_parent: Sequence: Y25C1A
  Identity: Version: 1
    Name: Sequence_name: Y25C1A.6
      Molecular_name: Y25C1A.6
        Y25C1A.6.1
        CE21473
      Other_name: CELE_Y25C1A.6 Accession_evidence: NDB BX284602
      Public_name: Y25C1A.6
    DB_info: Database: AceView gene 2D349
        WormQTL gene WBGene00021293
        WormFlux gene WBGene00021293
        NDB locus_tag CELE_Y25C1A.6
        NCBI gene 173653
        RefSeq protein NM_062036.8
        TrEMBL UniProtAcc Q9TYM3
        UniProt_GCRP UniProtAcc Q9TYM3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01499702
      WBVar00360781
      WBVar00360782
      WBVar01436794
      WBVar00360783
      WBVar00547692
      WBVar00360784
      WBVar00360785
      WBVar00547694
      WBVar00360786
      WBVar01500106
      WBVar02084576
      WBVar01934150
      WBVar01413034
      WBVar01244274
      WBVar01413035
      WBVar01576623
      WBVar01499591
      WBVar02029014
      WBVar00716472
      WBVar00716473
      WBVar00716474
      WBVar02108718
      WBVar00716475
      WBVar00716476
      WBVar00716477
      WBVar00716478
      WBVar00275660
      WBVar01503846
      WBVar01498329
      WBVar02117204
      WBVar00168439
      WBVar00168440
      WBVar00168441
      WBVar00168442
      WBVar01916064
      WBVar01477186
      WBVar01234916
      WBVar01234921
      WBVar01234923
      WBVar02009995
      WBVar00220652
      WBVar00220653
      WBVar00220654
      WBVar01500234
      WBVar01500235
    RNASeq_FPKM (74)
    Ortholog: chrII_pilon.g3851 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in rect_D based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and sir-2.1 based on microarray; tiling array; and RNA-seq studies. Is affected by seventeen chemicals including hydrogen sulfide; methylmercuric chloride; and Alovudine based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y25C1A.6
    Corresponding_transcript: Y25C1A.6.1
    Associated_feature: WBsf644037
      WBsf644038
      WBsf987144
      WBsf220981
  Experimental_info: RNAi_result: WBRNAi00073346 Inferred_automatically: RNAi_primary
      WBRNAi00061919 Inferred_automatically: RNAi_primary
      WBRNAi00036740 Inferred_automatically: RNAi_primary
      WBRNAi00020140 Inferred_automatically: RNAi_primary
      WBRNAi00055739 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1015683
      Expr1039283
      Expr1159258
      Expr2007178
      Expr2025411
    Microarray_results (16)
    Expression_cluster: WBPaper00029047:atx-3_downregulated
      WBPaper00032031:DConiospora_downregulated_cDNA_12h
      WBPaper00032031:DConiospora_downregulated_cDNA_24h
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00035197:fer-1_upregulated
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_downregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_downregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00040285:H2S_12hr_upregulated
      WBPaper00040285:H2S_24hr_upregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00045618:puf-8_downregulated
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00046805:csr-1(RNAi)_upregulated_Set2
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055013:hmg-3(bar24)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055944:C.butyricum_vs_OP50_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056039:ptl-1(ok621)_upregulated
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00057006:DietaryRestriction_downregulated
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058598:mex-1(or286)_downregulated
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_PA14
      WBPaper00058948:PA14_upregulated
      WBPaper00059224:tph-1(mg280)_upregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059373:stt-3(RNAi)_upregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060526:plp-1(ok2155)_upregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:HB115_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:rect_D
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:Y116A8C.19-F38C2.7
      WBPaper00061952:daf-18(nr2037)_downregulated
      WBPaper00062156:jmjd-5(zr1234)_updownregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:daf-16(RNAi)_downregulated
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062456:doxycycline_downregulated_CB4856_transcript
      WBPaper00062456:doxycycline_downregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064156:lbp-3(overexpress)_downregulated
      WBPaper00064158:xpo-1(RNAi)_downregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064403:Heat-killed-E.Coli_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064939:vit-5(RNAi)_downregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065315:mating_upregulated_Day2-7
      WBPaper00065749:Heat-Shock_downregulated_N2
      WBPaper00065835:Day5_vs_Day1_upregulated
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066005:RAGA-1_degradation_somatic_upregulated
      WBPaper00066093:E.coli-purE_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066232:ash-2(RNAi)_upregulated_WT
      WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
      cgc4386_cluster_5_1
      cgc4489_group_9
      WBPaper00025032:cluster_14
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00032062:age_regulated_genes
      WBPaper00034757:down_by_oxidative_stress
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_D
      WBPaper00037695:WC_5-day
      WBPaper00040823:alg-1(gk214)_upregulated
      WBPaper00041906:I-3690_vs_OP50_3d
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00045673:colistin_downregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
      WBPaper00048567:dnj-14_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00050538:Fasting_upregulated
      WBPaper00050538:Fasting_upregulated_cholesterol-dependent
      [cgc5767]:cluster_10
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(83_min)
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SET
      [cgc5767]:expression_class_SE_pi(23_min)
      [cgc6390]:mixed_oogenesis-somatic
    Interaction (221)
  Map_info: Positive: Positive_clone: Y25C1A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -8.63169
  Method: Gene