WormBase Tree Display for Gene: WBGene00020248

WBGene00020248 SMap: S_parent: Sequence: T05C1
  Identity: Version: 1
    Name: Sequence_name: T05C1.1
      Molecular_name: T05C1.1
        T05C1.1.1
        CE02859
      Other_name: CELE_T05C1.1 Accession_evidence: NDB BX284602
      Public_name: T05C1.1
    DB_info: Database: AceView gene 2E769
        WormQTL gene WBGene00020248
        WormFlux gene WBGene00020248
        NDB locus_tag CELE_T05C1.1
        NCBI gene 188112
        RefSeq protein NM_062390.3
        TrEMBL UniProtAcc Q22217
        UniProt_GCRP UniProtAcc Q22217
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01559389
      WBVar01499702
      WBVar00303083
      WBVar00303084
      WBVar00303085
      WBVar01371566
      WBVar01719559
      WBVar01498435
      WBVar01934578
      WBVar01934579
      WBVar01305644
      WBVar01538131
      WBVar01538132
      WBVar01499380
      WBVar01499381
      WBVar01499571
      WBVar01499572
      WBVar01499589
      WBVar01499590
      WBVar00364152
      WBVar00364153
      WBVar00364154
      WBVar00364155
      WBVar00237902
      WBVar01783070
      WBVar00726075
      WBVar00726076
      WBVar00726077
      WBVar00726078
      WBVar00726079
      WBVar00726080
      WBVar00726081
      WBVar00726082
      WBVar00726083
      WBVar00726084
      WBVar00726085
      WBVar00726086
      WBVar00726087
      WBVar00726088
      WBVar00726089
      WBVar00726090
      WBVar00171472
      WBVar00171473
      WBVar00171474
      WBVar00171475
      WBVar01499689
      WBVar01499690
      WBVar02129802
      WBVar02010035
    RNASeq_FPKM (74)
    Ortholog (23)
    Structured_description: Automated_description: Enriched in amphid sheath cell; head mesodermal cell; hypodermis; mechanosensory neurons; and pm6 based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray; RNA-seq; and tiling array studies. Is affected by fourteen chemicals including tryptophan; Alovudine; and stavudine based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T05C1.1
    Corresponding_transcript: T05C1.1.1
    Other_sequence: CD374705.1
      WBC00585_1
    Associated_feature: WBsf987612
      WBsf987613
      WBsf987614
      WBsf1012092
      WBsf221135
  Experimental_info: RNAi_result: WBRNAi00052481 Inferred_automatically: RNAi_primary
      WBRNAi00035186 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024280
      Expr1038815
      Expr1156106
      Expr2005863
      Expr2024080
    Microarray_results (19)
    Expression_cluster: WBPaper00030922:glycosylated_protein
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00041071:spe-44_downregulated
      WBPaper00042194:Tryptophan_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00048988:neuron_expressed
      WBPaper00050094:mes-6(bn66)_upregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00051311:VGLN-1-interacting
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:alovudine_24h_regulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rapamycin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055827:daf-2(e1370)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056330:glycine_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00057143:ztf-11(RNAi)_upregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058948:npr-8(ok1439)_downregulated_PA14
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059537:ngn-1(ok2200)_upregulated
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060703:nas-38(ok3407)_upregulated
      WBPaper00060871:M.humicola-infection_48h_regulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:AMsh
      WBPaper00061340:hmc
      WBPaper00061340:hmc_homolog
      WBPaper00061340:pm6
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061527:xbx-3-DH11.5_20397
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062197:mec-8_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062354:H.zoospora_12h_regulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062590:Aging_downregulated_neuron
      WBPaper00064005:starvation_downregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065841:26_2
      WBPaper00065841:45_0
      WBPaper00065841:58_1
      WBPaper00065841:60_0
      WBPaper00065841:79_2
      WBPaper00065841:92_0
      WBPaper00065841:110_0
      WBPaper00065841:110_1
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00032948:FedUp
      WBPaper00036130:mir-243_up_regulated
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045015:acs-3(ft5)_upregulated
      WBPaper00045015:nhr-25(RNAi)_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
    Interaction: WBInteraction000199310
      WBInteraction000266559
      WBInteraction000286529
      WBInteraction000398459
      WBInteraction000421146
      WBInteraction000434820
  Map_info: Positive: Positive_clone: T05C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -4.33569
  Method: Gene