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WormBase Tree Display for Gene: WBGene00011560

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Name Class

WBGene00011560SMapS_parentSequenceT07C4
IdentityVersion1
NameSequence_nameT07C4.3
Molecular_nameT07C4.3a
T07C4.3a.1
CE00602
T07C4.3b
CE21158
T07C4.3c
CE54547
T07C4.3b.1
T07C4.3c.1
Other_nameCELE_T07C4.3Accession_evidenceNDBBX284603
Public_nameT07C4.3
DB_infoDatabaseAceViewgene3L443
WormQTLgeneWBGene00011560
WormFluxgeneWBGene00011560
NDBlocus_tagCELE_T07C4.3
NCBIgene176451
RefSeqproteinNM_066887.7
NM_001420555.1
NM_066888.8
TrEMBLUniProtAccQ22290
A0A8S4SL88
Q9U376
UniProt_GCRPUniProtAccA0A8S4SL88
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar01500260
WBVar01567343
WBVar01499545
WBVar01499546
WBVar02132633
WBVar00178522
WBVar00407179
WBVar00178523
WBVar00407180
WBVar00407181
WBVar00407182
WBVar00407183
WBVar00407184
WBVar00407185
WBVar01499774
WBVar01480295
WBVar01723407
WBVar00260140
WBVar01448026
WBVar01904145
WBVar01448028
WBVar00855973
WBVar00855974
WBVar00855975
WBVar00855976
WBVar00855977
WBVar00855978
WBVar00855979
WBVar00855980
WBVar00855981
WBVar00855982
WBVar00855983
WBVar00855984
WBVar00855985
WBVar00855986
WBVar00855987
WBVar00855988
WBVar00855989
WBVar00855990
WBVar00855991
WBVar01771171
WBVar00855992
RNASeq_FPKM (74)
GO_annotation00074790
00074791
00074792
00074793
Ortholog (21)
Structured_descriptionAutomated_descriptionEnriched in several structures, including RIC; distal tip cell; germ line; head mesodermal cell; and pharyngeal cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including skn-1; glp-1; and gld-1 based on microarray; RNA-seq; and proteomic studies. Is affected by thirteen chemicals including bisphenol S; Alovudine; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST07C4.3a
T07C4.3b
T07C4.3c
Corresponding_transcriptT07C4.3a.1
T07C4.3b.1
T07C4.3c.1
Other_sequencePT02748
CRC02812_1
CR03784
CR07897
CRC04464_1
CBC06682_1
CBC08092_1
CGC00708_1
Associated_featureWBsf993986
WBsf993987
WBsf993988
WBsf225714
WBsf225715
Experimental_infoRNAi_result (30)
Expr_patternExpr1020692
Expr1035095
Expr1156336
Expr2005959
Expr2024175
Drives_constructWBCnstr00030560
Construct_productWBCnstr00030560
Microarray_results (33)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00035073:mitochondria_protein
WBPaper00035269:cde-1_regulated
WBPaper00037047:aging_accelerated_insoluble_protein
WBPaper00037047:insoluble_protein
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:germline-precursors_embryo_SelectivelyEnriched
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045050:csr-1(hypomorph)_downregulated
WBPaper00045050:drh-3 (ne4253)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047132:skn-1(RNAi)_downregulated_glp-1(ts)-dependent
WBPaper00048988:neuron_expressed
WBPaper00049954:BPS_downregulated
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051039:germline_enriched
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_downregulated
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057288:iff-1(RNAi)_upregulated_transcript
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061340:Excretory_cell
WBPaper00061340:Germline
WBPaper00061340:mc2
WBPaper00061340:pm3_pm4_pm5
WBPaper00061340:RIC
WBPaper00061341:28C_24h_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061527:C41G7.3_2766-ani-2_2946
WBPaper00061527:T22D1.5-inx-14
WBPaper00061651:Distal_tip_cell_enriched
WBPaper00061651:I3_enriched
WBPaper00061651:M3_enriched
WBPaper00061818:ELKS-1_interacting
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064163:ZNFX-1_interacting_young-adult
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064315:mes-3(bn199)_downregulated_EGCs
WBPaper00064315:mes-4(bn73)_downregulated_EGCs
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065373:Cisplatin_upregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065373:sek-1(km4)_upregulated_Ref
WBPaper00065841:31_0
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
cgc4386_cluster_4_1
cgc4489_group_1
cgc4489_group_12
WBPaper00025032:cluster_3
WBPaper00025032:cluster_11
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00028482:PA14_downregulated
WBPaper00031060:2-deoxy-D-glucose_downregulated
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00034739:N2lessDR1350
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_down_regulated
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040821:Au-NP_regulated
WBPaper00040963:TA300_down
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041906:I-4317_vs_OP50_10d
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042274:tbx-2(bx59)_downregulated
WBPaper00044091:Bpseudomallei_regulated_qPCR-confirmed
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048624:hlh-25(ok1710)_upregulated
WBPaper00051387:Triclosan_downregulated
WBPaper00055435:AuNPs_downregulated
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:cluster_8
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(53_min)
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MD_pd(23_min)
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
[cgc6390]:Cluster_F
[cgc6390]:oogenesis-enriched
Interaction (101)
Map_infoPositivePositive_cloneT07C4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII2.46562
ReferenceWBPaper00061547
MethodGene