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WormBase Tree Display for Gene: WBGene00011417

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Name Class

WBGene00011417SMapS_parentSequenceT04A11
IdentityVersion1
NameSequence_nameT04A11.2
Molecular_nameT04A11.2
T04A11.2.1
CE13124
Other_nameCELE_T04A11.2Accession_evidenceNDBBX284604
Public_nameT04A11.2
DB_infoDatabaseAceViewgene4N240
WormQTLgeneWBGene00011417
WormFluxgeneWBGene00011417
NDBlocus_tagCELE_T04A11.2
PanthergeneCAEEL|WormBase=WBGene00011417|UniProtKB=G5ECB5
familyPTHR13774
NCBIgene188043
RefSeqproteinNM_069985.3
TREEFAMTREEFAM_IDTF314596
TrEMBLUniProtAccG5ECB5
UniProt_GCRPUniProtAccG5ECB5
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar01499522
WBVar01500079
WBVar02124482
WBVar01498806
WBVar01498807
WBVar01498811
WBVar01498996
WBVar01499925
WBVar02124705
WBVar01498660
WBVar02121031
WBVar02121220
WBVar02122612
WBVar01498771
WBVar01500245
WBVar01500065
WBVar01498778
RNASeq_FPKM (74)
GO_annotation00011440
00011441
00011442
00118687
00118688
Ortholog (34)
ParalogWBGene00011416Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00011419Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00011420Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00235310Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable isomerase activity. Predicted to be involved in biosynthetic process. Predicted to be located in cytoplasm. Is an ortholog of human PBLD (phenazine biosynthesis like protein domain containing).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST04A11.2
Corresponding_transcriptT04A11.2.1
Other_sequenceOden_isotig15197
Oden_isotig15198
Associated_featureWBsf998132
WBsf231028
Experimental_infoRNAi_resultWBRNAi00052318Inferred_automaticallyRNAi_primary
WBRNAi00052316Inferred_automaticallyRNAi_primary
WBRNAi00018096Inferred_automaticallyRNAi_primary
WBRNAi00052317Inferred_automaticallyRNAi_primary
WBRNAi00018099Inferred_automaticallyRNAi_primary
Expr_patternExpr1022630
Expr1035025
Expr1155950
Drives_constructWBCnstr00030673
Construct_productWBCnstr00030673
Microarray_results (21)
Expression_clusterWBPaper00032425:down_in_rde-4
WBPaper00032425:down_in_zfp-1
WBPaper00040285:H2S_24hr_upregulated
WBPaper00046024:sleep_downregulated_oscillating
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00050344:PLM-neuron_enriched
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_specific
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00054872:egl-9(sa307)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
WBPaper00057068:numr-1(RNAi)_downregulated_Cadmium
WBPaper00057265:metaformin_downregulated_OP50-MR
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
WBPaper00061405:S.aureus_downregulated_starvation
WBPaper00061527:K07E1.1-Y71F9B.13_934
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061699:daf-18(ok480)_downregulated
WBPaper00062056:lin-37(n758)_downregulated
WBPaper00062056:met-2(n4256)_downregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062293:isp-1(qm150)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064532:pals-25(icb98)_downregulated
WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4489_group_9
cgc4489_group_18
WBPaper00006465:IV_ethanol_late_repression
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00032948:StarveUp2
WBPaper00034757:up_by_oxidative_stress
WBPaper00035227:heat_shock_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036123:Fluoranthene_regulated
WBPaper00036286:Pattern_D
WBPaper00038172:aak-2overexpression_down_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
WBPaper00040858:eQTL_regulated_aging
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045015:nhr-25(RNAi)_downregulated
WBPaper00045673:colistin_downregulated
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00053236:daf-16(mgDF50)_regulated_Starved
WBPaper00053236:Starvation_regulated_N2
InteractionWBInteraction000103370
WBInteraction000153039
WBInteraction000208120
WBInteraction000237795
WBInteraction000250577
WBInteraction000253948
WBInteraction000270614
WBInteraction000285270
WBInteraction000295517
WBInteraction000313595
WBInteraction000349996
WBInteraction000350775
WBInteraction000354956
WBInteraction000357567
WBInteraction000361249
WBInteraction000367229
WBInteraction000375738
WBInteraction000377301
WBInteraction000397268
WBInteraction000398389
WBInteraction000398391
WBInteraction000401494
WBInteraction000412735
WBInteraction000413262
WBInteraction000415989
WBInteraction000417634
WBInteraction000426885
WBInteraction000427530
WBInteraction000435190
WBInteraction000441863
WBInteraction000444279
WBInteraction000449199
WBInteraction000457269
WBInteraction000459696
WBInteraction000463114
WBInteraction000463551
WBInteraction000465729
WBInteraction000467451
WBInteraction000468023
WBInteraction000471019
WBInteraction000471439
WBInteraction000474961
WBInteraction000569788
Map_infoPositivePositive_cloneT04A11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV5.97397
ReferenceWBPaper00038491
WBPaper00055090
MethodGene