WormBase Tree Display for Feature: WBsf962194
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| WBsf962194 | SMap | S_parent | Sequence | Y105C5A |
|---|---|---|---|---|
| Sequence_details | Flanking_sequences | gagagcgtgaaaagtgggcggggttcaagcaaaaccgcccgtataaaaagttggccggataatatagaaaaatcagttttctcttcattttctcactaaattttcaaatttcag | ccaaaatgcccactacaccacgttcacagccaggaaccgtcggaaaagacatggccggagccctggccggtcggcacaacgatatgcctccaatctcttcaaattaccagggacgtccgggaaatgcgaatcccaactatagatgtaagtttaattagtgttaactttctataataattgaacattttcagatcaaccaagtgcagacaacgcacggaatgtggccgactggaccaaaagccatatgaaaaccgccagagaaaatgctgcagcaaagagataattgattttaaggatttgttaataaatgttaatttttaaacgtttttttggtattttgaaataaaaagtacggcattggaaagctga | |
| Mapping_target | Y105C5A | |||
| Origin | Species | Caenorhabditis elegans | ||
| Visible | Description | SL2 trans-splice leader acceptor site | ||
| SO_term | SO:0000706 | |||
| Defined_by | Defined_by_analysis | RNASeq.elegans.CB1370.WBls:0000031.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX008139 | 2 | |
| RNASeq.elegans.CB1370.WBls:0000052.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX008140 | 1 | |||
| RNASeq.elegans.CB4689.WBls:0000038.Male.WBbt:0007833.PRJNA33023.SRX004868 | 2 | |||
| RNASeq.elegans.JK1107.WBls:0000038.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX014010 | 8 | |||
| RNASeq.elegans.MT10430.WBls:0000024.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX004869 | 17 | |||
| RNASeq.elegans.MT10430.WBls:0000024.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX049744 | 2 | |||
| RNASeq.elegans.N2.WBls:0000024.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX145447 | 1 | |||
| RNASeq.elegans.N2.WBls:0000027.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX001872 | 3 | |||
| RNASeq.elegans.N2.WBls:0000063.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX014008 | 5 | |||
| RNASeq.elegans.N2.WBls:0000063.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX014009 | 9 | |||
| Remark | Defined by RNASeq data (example read: SRR027189.3601853.+.SL2i - 26M) from RNASeq.elegans.CB1370.WBls:0000031.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX008139 with 2 reads | |||
| Defined by RNASeq data (example read: SRR027191.388215.+.SL2f - 28M) from RNASeq.elegans.CB1370.WBls:0000052.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX008140 with 1 reads | ||||
| Defined by RNASeq data (example read: SRR016685.11501535.+.SL2i - 26M) from RNASeq.elegans.CB4689.WBls:0000038.Male.WBbt:0007833.PRJNA33023.SRX004868 with 2 reads | ||||
| Defined by RNASeq data (example read: SRR031122.51103597.+.SL2f - 26M) from RNASeq.elegans.JK1107.WBls:0000038.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX014010 with 8 reads | ||||
| Defined by RNASeq data (example read: SRR016691.15315454.+.SL2f - 26M) from RNASeq.elegans.MT10430.WBls:0000024.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX004869 with 17 reads | ||||
| Defined by RNASeq data (example read: SRR137925.3928651.+.SL2 - 67M) from RNASeq.elegans.MT10430.WBls:0000024.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX049744 with 2 reads | ||||
| Defined by RNASeq data (example read: SRR493079.83136905.+.SL2 - 69M) from RNASeq.elegans.N2.WBls:0000024.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX145447 with 1 reads | ||||
| Defined by RNASeq data (example read: SRR006512.37809491.+.SL2f - 27M) from RNASeq.elegans.N2.WBls:0000027.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX001872 with 3 reads | ||||
| Defined by RNASeq data (example read: SRR031117.10207261.+.SL2i - 26M) from RNASeq.elegans.N2.WBls:0000063.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX014008 with 5 reads | ||||
| Defined by RNASeq data (example read: SRR031120.8320859.+.SL2i - 26M) from RNASeq.elegans.N2.WBls:0000063.Hermaphrodite.WBbt:0007833.PRJNA33023.SRX014009 with 9 reads | ||||
| Method | SL2 |
