WormBase Tree Display for CDS: ZK430.3
expand all nodes | collapse all nodes | view schema
| ZK430.3 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK430 | |||
| Structure | Source_exons | 1 | 42 | |||
| 154 | 237 | |||||
| 826 | 984 | |||||
| 1033 | 1186 | |||||
| 1232 | 1329 | |||||
| DB_info | Database | KEGG | KEGG_id | 1.15.1.1 | ||
| TrEMBL | UniProtAcc | Q27538 | ||||
| UniProt | UniProtAcc | Q27538 | ||||
| UniProt_GCRP | UniProtAcc | Q27538 | ||||
| AlphaFold | entry | Q27538 | ||||
| NCBI_protein | GI_number | GI:351065681 | ||||
| TREEFAM | TREEFAM_ID | TF105131 | ||||
| Protein_id | CHROMOSOME_II | CCD61672 | 1 | |||
| DB_remark | SOD-5 protein; contains similarity to Pfam domain PF00080 (Copper/zinc superoxide dismutase (SODC)); contains similarity to Interpro domains IPR001424 (Superoxide dismutase, copper/zinc binding domain), IPR036423 (Superoxide dismutase-like, copper/zinc binding domain superfamily), IPR024134 (Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00007036 | ||||
| Corresponding_transcript | ZK430.3.1 | |||||
| Corresponding_protein | CE05080 | |||||
| Corresponding_PCR_product | cenix:237-a9 | |||||
| mv_ZK430.3 | ||||||
| mv_ZK430.6 | ||||||
| sjj_ZK430.3 | ||||||
| sjj_ZK430.6 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA | OSTF114F5_1 | Inferred_automatically | transcript_builder.pl | |||
| L1_Nanopore_Li_268743 | Inferred_automatically | transcript_builder.pl | ||||
| yk440a5.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk440a5.5 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR114F5_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_308880 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00087931 | |||||
| WBRNAi00076885 | ||||||
| WBRNAi00022012 | ||||||
| WBRNAi00038294 | ||||||
| WBRNAi00092701 | ||||||
| WBRNAi00087933 | ||||||
| WBRNAi00022014 | ||||||
| WBRNAi00059427 | ||||||
| WBRNAi00064043 | ||||||
| WBRNAi00087930 | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | Superoxide dismutase [Cu-Zn] | Accession_evidence | UniProt | TR:Q27538 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
