WormBase Tree Display for CDS: Y39B6A.24
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| Y39B6A.24 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y39B6A | |||
| Structure | Source_exons | 1 | 810 | |||
| 1201 | 1566 | |||||
| DB_info | Database | KEGG | KEGG_id | 3.4.23.- | ||
| SwissProt | UniProtAcc | Q8MYN5 | ||||
| UniProt | UniProtAcc | Q8MYN5 | ||||
| UniProt_GCRP | UniProtAcc | Q8MYN5 | ||||
| AlphaFold | entry | Q8MYN5 | ||||
| NCBI_protein | GI_number | GI:21038846 | ||||
| TREEFAM | TREEFAM_ID | TF315800 | ||||
| Protein_id | CHROMOSOME_V | CAD31821 | 1 | |||
| DB_remark | ASP-17 protein; contains similarity to Pfam domain PF00026 (Eukaryotic aspartyl protease); contains similarity to Interpro domains IPR001461 (Aspartic peptidase A1 family), IPR021109 (Aspartic peptidase domain superfamily), IPR033121 (Peptidase family A1 domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00012683 | ||||
| Corresponding_transcript | Y39B6A.24.1 | |||||
| Corresponding_protein | CE29865 | |||||
| Corresponding_PCR_product | cenix:168-b9 | |||||
| mv_Y39B6B.j | ||||||
| sjj2_Y39B6A.24 | ||||||
| sjj_Y39B6B.j | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA | male_Nanopore_Roach_173278 | |||||
| young_adult_Nanopore_Roach_36075 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_35504 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_234117 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG1061|c4_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00070068 | |||||
| WBRNAi00020384 | ||||||
| WBRNAi00076780 | ||||||
| WBRNAi00056178 | ||||||
| Microarray_results (16) | ||||||
| Brief_identification | Aspartic protease 17 | Accession_evidence | UniProt | SP:Q8MYN5 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
