WormBase Tree Display for CDS: T19C9.10a
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| T19C9.10a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T19C9 | |||
| Structure | Source_exons | 1 | 15 | |||
| 717 | 909 | |||||
| 955 | 1181 | |||||
| 1224 | 1391 | |||||
| DB_info | Database | KEGG | KEGG_id | 3.6.4.12 | ||
| TrEMBL | UniProtAcc | D3YT90 | ||||
| UniProt | UniProtAcc | D3YT90 | ||||
| UniProt_GCRP | UniProtAcc | D3YT90 | ||||
| AlphaFold | entry | D3YT90 | ||||
| NCBI_protein | GI_number | GI:290447432 | ||||
| Protein_id | CHROMOSOME_V | CBK19476 | 1 | |||
| DB_remark | contains similarity to Pfam domain PF05970 (PIF1-like helicase); contains similarity to Interpro domain IPR010285 (DNA helicase Pif1-like) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | From_analysis | RNASeq_Hillier_elegans | ||||
| Visible | Gene | WBGene00050934 | ||||
| Corresponding_transcript | T19C9.10a.1 | |||||
| T19C9.10a.2 | ||||||
| Corresponding_protein | CE44640 | |||||
| Corresponding_oligo_set | A_12_P155445 | |||||
| A_12_P155446 | ||||||
| A_12_P155447 | ||||||
| A_12_P155448 | ||||||
| A_12_P155449 | ||||||
| GPL19516_CGZ0012352 | ||||||
| GPL19516_CGZ0035525 | ||||||
| GPL19516_CGZ0035526 | ||||||
| GPL21109_T19C9.10a | ||||||
| GPL21109_T19C9.10b | ||||||
| Matching_cDNA | elegans_PE_SS_GG5907|c2_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| FR831174 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_251066 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | A_12_P155445 | |||||
| A_12_P155446 | ||||||
| A_12_P155447 | ||||||
| A_12_P155448 | ||||||
| A_12_P155449 | ||||||
| GPL19516_CGZ0012352 | ||||||
| GPL19516_CGZ0035525 | ||||||
| GPL19516_CGZ0035526 | ||||||
| GPL21109_T19C9.10a | ||||||
| GPL21109_T19C9.10b | ||||||
| Brief_identification | ATP-dependent DNA helicase | Accession_evidence | UniProt | TR:D3YT90 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 22 Nov 2012 00:00:00 | WBPerson4025 | ||||
| Remark | [071016 gw3] Created this pseudogenic fragment based on the protein homology. | Protein_id_evidence | WP:CE05256 | |||
| Curator_confirmed | WBPerson4025 | |||||
| [100212 pad] Converted into a CDS to follow RNAseq data. | Curator_confirmed | WBPerson1983 | ||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| [110718 gw3] It is possible that this gene should be merged with T19C9.8 to form a pseudogene, based on the two ESTs that overlap these two genes. | Accession_evidence | NDB | FR831173 | |||
| FR831174 | ||||||
| Method | curated |
