WormBase Tree Display for CDS: OVOC5610
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| OVOC5610 | Evidence | Curator_confirmed | WBPerson2062 | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | OVOC_OM2_79 | |||
| Structure | Source_exons | 1 | 40 | |||
| 431 | 531 | |||||
| 1636 | 1755 | |||||
| DB_info | DB_remark | OVO-EXC-9 protein; contains similarity to Pfam domain PF00412 (LIM domain); contains similarity to Interpro domain IPR001781 (Zinc finger, LIM-type) | ||||
| Origin | From_laboratory | MBM | ||||
| Species | Onchocerca volvulus | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00242419 | ||||
| Corresponding_transcript | OVOC5610.1 | |||||
| Corresponding_protein | OVP14196 | |||||
| Matching_cDNA | AA917132 | Inferred_automatically | transcript_builder.pl | |||
| AI130597 | Inferred_automatically | transcript_builder.pl | ||||
| AI308650 | Inferred_automatically | transcript_builder.pl | ||||
| AI317910 | Inferred_automatically | transcript_builder.pl | ||||
| AI511506 | Inferred_automatically | transcript_builder.pl | ||||
| AI574555 | Inferred_automatically | transcript_builder.pl | ||||
| BE239247 | Inferred_automatically | transcript_builder.pl | ||||
| BF400483 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG1459|c68_g1_i3 | Inferred_automatically | transcript_builder.pl | ||||
| ovolvulus_GG1459|c68_g1_i4 | Inferred_automatically | transcript_builder.pl | ||||
| RNASeq_FPKM | WBls:0000104 (15) | |||||
| WBls:0000107 | 19.0522 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000107.Unknown.WBbt:0007833.ERP001350.ERX200395 | |||
| WBls:0000108 | 2.39121 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200392 | |||
| 2.42992 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200393 | ||||
| 5.37248 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000108.Unknown.WBbt:0007833.ERP001350.ERX200391 | ||||
| WBls:0000664 | 11.5179 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200396 | |||
| 19.2431 | From_analysis | RNASeq.ovolvulus.WBStrain00041977.WBls:0000664.Unknown.WBbt:0007833.ERP001350.ERX200397 | ||||
| Remark | [140606 es9] Initiation methionine of OVOC5610 is redefined using RNA-Seq data. | Curator_confirmed | WBPerson2062 | |||
| Method | curated |
