WormBase Tree Display for CDS: F53F10.2f
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F53F10.2f | SMap | S_parent | Sequence | F53F10 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 117 | |||
DB_info | Database | TrEMBL | UniProtAcc | A0A2K5ATP6 | ||
UniProt | UniProtAcc | A0A2K5ATP6 | ||||
AlphaFold | entry | A0A2K5ATP6 | ||||
NCBI_protein | GI_number | GI:1346713740 | ||||
Protein_id | CHROMOSOME_I | SPC47133 | 1 | |||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson4025 | ||||
Start_not_found | 1 | |||||
Visible | Gene | WBGene00018764 | ||||
Corresponding_transcript | F53F10.2f.1 | |||||
Corresponding_protein | CE52609 | |||||
Matching_cDNA | male_Nanopore_Roach_108857 | |||||
young_adult_Nanopore_Roach_84421 | ||||||
adult_Nanopore_Roach_17876 | ||||||
adult_Nanopore_Roach_104250 | ||||||
Brief_identification | BRCA1 | Accession_evidence | UniProt | TR:A0A2K5ATP6 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 13 Dec 2017 10:22:36 | WBPerson4025 | ||||
Remark | This small isoform was added to represent the small open reading frame (sORF) described in the database 'sORF.org'. It is possible that this is a 'micro ORF'. No initial Methionine codon is present; it is possible that this uses a non-canonical initiation codon. | Paper_evidence | WBPaper00053415 | |||
Curator_confirmed | WBPerson4025 | |||||
[180510 gw3] This has a non-canonical initiation site. | ||||||
[180510 gw3] This is a possible 'micro ORF'. | ||||||
This starts with a codon for Valine | ||||||
Method | curated |