Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for CDS: F53F10.2f

expand all nodes | collapse all nodes | view schema

Name Class

F53F10.2fSMapS_parentSequenceF53F10
StructureSource_exons1117
DB_infoDatabaseTrEMBLUniProtAccA0A2K5ATP6
UniProtUniProtAccA0A2K5ATP6
AlphaFoldentryA0A2K5ATP6
NCBI_proteinGI_numberGI:1346713740
Protein_idCHROMOSOME_ISPC471331
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
IsoformCurator_confirmedWBPerson4025
Start_not_found1
VisibleGeneWBGene00018764
Corresponding_transcriptF53F10.2f.1
Corresponding_proteinCE52609
Matching_cDNAmale_Nanopore_Roach_108857
young_adult_Nanopore_Roach_84421
adult_Nanopore_Roach_17876
adult_Nanopore_Roach_104250
Brief_identificationBRCA1Accession_evidenceUniProtTR:A0A2K5ATP6
RNASeq_FPKM (74)
Last_reviewed13 Dec 2017 10:22:36WBPerson4025
RemarkThis small isoform was added to represent the small open reading frame (sORF) described in the database 'sORF.org'. It is possible that this is a 'micro ORF'. No initial Methionine codon is present; it is possible that this uses a non-canonical initiation codon.Paper_evidenceWBPaper00053415
Curator_confirmedWBPerson4025
[180510 gw3] This has a non-canonical initiation site.
[180510 gw3] This is a possible 'micro ORF'.
This starts with a codon for Valine
Methodcurated