WormBase Tree Display for CDS: F52H3.2
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| F52H3.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F52H3 | |||
| Structure | Source_exons | 1 | 199 | |||
| 247 | 517 | |||||
| 571 | 954 | |||||
| 1004 | 1407 | |||||
| 1471 | 1910 | |||||
| 1967 | 2185 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q20680 | ||
| UniProt | UniProtAcc | Q20680 | ||||
| UniProt_GCRP | UniProtAcc | Q20680 | ||||
| AlphaFold | entry | Q20680 | ||||
| NCBI_protein | GI_number | GI:3877390 | ||||
| TREEFAM | TREEFAM_ID | TF354240 | ||||
| Protein_id | CHROMOSOME_II | CAA91322 | 1 | |||
| DB_remark | MTCU-2 protein; contains similarity to Pfam domains PF01134 (Glucose inhibited division protein A), PF13932 (tRNA modifying enzyme MnmG/GidA C-terminal helical bundle), PF21680 (tRNA modifying enzyme MnmG/GidA C-terminal helical domain); contains similarity to Interpro domains IPR004416 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG), IPR036188 (FAD/NAD(P)-binding domain superfamily), IPR044920 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain superfamily), IPR047001 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal subdomain), IPR026904 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG, C-terminal), IPR049312 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme, C-terminal, N-terninal subdomain), IPR002218 (tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related), IPR040131 (MnmG, N-terminal domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00009944 | ||||
| Corresponding_transcript | F52H3.2.1 | |||||
| Corresponding_protein | CE03398 | |||||
| Corresponding_PCR_product | cenix:148-f3 | |||||
| mv_F52H3.2 | ||||||
| sjj_F52H3.2 | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA (45) | ||||||
| RNAi_result | WBRNAi00015441 | |||||
| WBRNAi00110656 | ||||||
| WBRNAi00110658 | ||||||
| WBRNAi00110657 | ||||||
| WBRNAi00008108 | ||||||
| WBRNAi00032643 | ||||||
| WBRNAi00048029 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | Protein MTO1 homolog, mitochondrial | Accession_evidence | UniProt | SP:Q20680 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf014680 | |||||
| Method | curated |
