WormBase Tree Display for CDS: F43G9.9
expand all nodes | collapse all nodes | view schema
| F43G9.9 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F43G9 | |||
| Structure | Source_exons | 1 | 120 | |||
| 249 | 464 | |||||
| 509 | 751 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | G5EFB5 | ||
| UniProt | UniProtAcc | G5EFB5 | ||||
| UniProt_GCRP | UniProtAcc | G5EFB5 | ||||
| AlphaFold | entry | G5EFB5 | ||||
| NCBI_protein | GI_number | GI:3877102 | ||||
| Protein_id | CHROMOSOME_I | CAB02104 | 1 | |||
| DB_remark | CPN-1 protein; contains similarity to Pfam domains PF00307 (Calponin homology (CH) domain), PF00402 (Calponin family repeat); contains similarity to Interpro domains IPR001715 (Calponin homology domain), IPR003096 (Smooth muscle protein/calponin), IPR036872 (CH domain superfamily), IPR000557 (Calponin repeat) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00000777 | ||||
| Corresponding_transcript | F43G9.9.1 | |||||
| F43G9.9.2 | ||||||
| Corresponding_protein | CE10370 | |||||
| Corresponding_PCR_product | cenix:118-g9 | |||||
| mv_AAF01679 | ||||||
| sjj_F43G9.9 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (93) | ||||||
| RNAi_result | WBRNAi00047227 | |||||
| WBRNAi00080520 | ||||||
| WBRNAi00003665 | ||||||
| WBRNAi00062249 | ||||||
| WBRNAi00027914 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Calponin-homology (CH) domain-containing protein | Accession_evidence | UniProt | TR:G5EFB5 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf021169 | |||||
| Method | curated |
