WormBase Tree Display for CDS: F43C9.2c
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| F43C9.2c | SMap | S_parent | Sequence | F43C9 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 42 | |||
| DB_info | Database | TrEMBL | UniProtAcc | A0A2K5AU12 | ||
| UniProt | UniProtAcc | A0A2K5AU12 | ||||
| AlphaFold | entry | A0A2K5AU12 | ||||
| NCBI_protein | GI_number | GI:1394371030 | ||||
| Protein_id | CHROMOSOME_X | SPC48668 | 2 | |||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Visible | Gene | WBGene00018376 | ||||
| Corresponding_transcript | F43C9.2c.1 | |||||
| Corresponding_protein | CE52501 | |||||
| Brief_identification | Calmodulin | Accession_evidence | UniProt | TR:A0A2K5AU04 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 20 Dec 2017 14:23:07 | WBPerson1983 | ||||
| Remark | [171220 pad] This small isoform was added to represent the small open reading frame (sORF) described in the database 'sORF.org'. It is possible that this is a 'micro ORF'. No initial Methionine codon is present; it is possible that this uses a non-canonical initiation codon. | Paper_evidence | WBPaper00053415 | |||
| Curator_confirmed | WBPerson1983 | |||||
| From_analysis | RNASeq | |||||
| [180510 gw3] This has a non-canonical initiation site. | ||||||
| [180510 gw3] This is a possible 'micro ORF'. | ||||||
| This starts with a codon for Leucine which is an acceptable alternative initiation codon in the NCBI translation table | ||||||
| Method | curated |
