WormBase Tree Display for CDS: F26C11.3c
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| F26C11.3c | SMap | S_parent | Sequence | F26C11 | |
|---|---|---|---|---|---|
| Structure | Source_exons (27) | ||||
| DB_info | Database | SwissProt | UniProtAcc | Q09550 | |
| UniProt | UniProtAcc | Q09550 | |||
| UniProt_GCRP | UniProtAcc | Q09550 | |||
| AlphaFold | entry | Q09550 | |||
| Protein_id | CHROMOSOME_II | CAR31486 | 3 | ||
| DB_remark | contains similarity to Interpro domains IPR000436 (Sushi/SCR/CCP domain), IPR042312 (Uncharacterized protein F26C11.3-like), IPR035976 (Sushi/SCR/CCP superfamily) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Curator_confirmed | WBPerson1983 | |||
| Visible | Gene | WBGene00009147 | |||
| Corresponding_transcript | F26C11.3c.1 | ||||
| Corresponding_protein | CE53816 | ||||
| Corresponding_PCR_product | WBPaper00038381:F26C11_1_1 | ||||
| cenix:147-d7 | |||||
| mv_F26C11.3 | |||||
| sjj_F26C11.3 | |||||
| Corresponding_oligo_set (26) | |||||
| RNAi_result | WBRNAi00085863 | ||||
| WBRNAi00001287 | |||||
| WBRNAi00112676 | |||||
| WBRNAi00013918 | |||||
| WBRNAi00045605 | |||||
| Microarray_results (28) | |||||
| RNASeq_FPKM (74) | |||||
| Last_reviewed | 21 Oct 2019 09:55:33 | WBPerson4025 | |||
| Remark | [080715 pad] This is a very interesting locus as there is an array of 1st exons that all splice to exon 2. The 1st exons have a degree of conservation of key amino acids but are variable and are not direct duplications. | Curator_confirmed | WBPerson1983 | ||
| [110728 pad] Added an inframe intron into one of the larger ORFs which is common to all Isoforms. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeq_Hillier_elegans | ||||
| [191021 gw3] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq | ||||
| Method | curated |
