WormBase Tree Display for CDS: CJA10254
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CJA10254 | Evidence | Inferred_automatically | make_isoforms.pl | ||
---|---|---|---|---|---|
SMap | S_parent | Sequence | Cjap.Contig16436 | ||
Structure | Source_exons | 1 | 166 | ||
949 | 1074 | ||||
1152 | 1257 | ||||
1517 | 1598 | ||||
DB_info | Database | TREEFAM | TREEFAM_ID | TF314474 | |
DB_remark | CJP-PDL-1 protein; contains similarity to Pfam domain PF05351 (GMP-PDE, delta subunit); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR017287 (Retinal rod rhodopsin-sensitive cGMP 3', 5'-cyclic phosphodiesterase, delta subunit), IPR037036 (GMP phosphodiesterase, delta subunit superfamily), IPR008015 (GMP phosphodiesterase, delta subunit) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis japonica | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Visible | Gene | WBGene00129458 | |||
Corresponding_transcript | CJA10254.1 | ||||
Corresponding_protein | JA16874 | ||||
Corresponding_oligo_set | GPL14145_CJA10254_21-80_0.887_20_B | ||||
GPL14145_CJA10254_85-144_0.923_2_C | |||||
GPL14145_CJA10254_171-230_0.918_4_A | |||||
Matching_cDNA | japonica_GG18602|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
japonica_GG18602|c0_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
Microarray_results | GPL14145_CJA10254_171-230_0.918_4_A | ||||
GPL14145_CJA10254_21-80_0.887_20_B | |||||
GPL14145_CJA10254_85-144_0.923_2_C | |||||
RNASeq_FPKM (4) | |||||
Remark | based on Augustus prediction Cjap.Contig16436.g11494.t1[100726 mh6] | ||||
Method | curated |