CBG14691 | SMap | S_parent | Sequence | cb25.fpc3857a |
| Structure | Source_exons (11) |
| DB_info | Database | UniProt | UniProtAcc | A8XKG7 |
| | | | UniProtId | A8XKG7_CAEBR |
| | | TrEMBL | UniProtAcc | A8XKG7 |
| | | UniProt_GCRP | UniProtAcc | A8XKG7 |
| | | TREEFAM | TREEFAM_ID | TF323171 |
| | Protein_id | cb25.fpc3857a | CAP33141 | 2 |
| | DB_remark | CBR-DLG-1 protein; contains similarity to Pfam domains PF00018 (SH3 domain), PF00595 (PDZ domain), PF00625 (Guanylate kinase), PF09058 (L27_1); contains similarity to Interpro domains IPR008145 (Guanylate kinase/L-type calcium channel beta subunit), IPR001452 (SH3 domain), IPR036028 (SH3-like domain superfamily), IPR036892 (L27 domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001478 (PDZ domain), IPR015143 (L27-1), IPR036034 (PDZ superfamily), IPR004172 (L27 domain) |
| Origin | From_laboratory | RW |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Confirmed |
| Visible | Gene | WBGene00035111 |
| | Corresponding_transcript | CBG14691.1 |
| | Corresponding_protein | CBP46255 |
| | Corresponding_oligo_set | GPL8303_CB6_WBGene00035111_A |
| | | GPL8303_CB6_WBGene00035111_B |
| | | GPL14143_CBG14691_2538-2597_0.810_4_B |
| | | GPL14143_CBG14691_2715-2774_0.723_161_C |
| | | GPL14143_CBG14691_2880-2939_0.797_14_A |
| | Matching_cDNA | briggsae_GG1454|c3_g2_i1 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL8303_CB6_WBGene00035111_A |
| | | GPL8303_CB6_WBGene00035111_B |
| | | GPL14143_CBG14691_2538-2597_0.810_4_B |
| | | GPL14143_CBG14691_2715-2774_0.723_161_C |
| | | GPL14143_CBG14691_2880-2939_0.797_14_A |
| | RNASeq_FPKM | WBls:0000002 | 18.1053 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | | 25.7163 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | | 31.0343 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | | 32.2329 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | WBls:0000003 | 41.5195 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | | 44.6083 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | | 55.8498 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | WBls:0000004 | 220.406 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | 224.959 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | | 227.492 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | | 230.029 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | | 268.67 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | WBls:0000024 | 19.4945 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | | 22.8379 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | | 23.134 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | 34.5604 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | 36.6775 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | | 40.9062 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 55.3726 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | | 60.3504 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | | 78.6976 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 81.8665 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | WBls:0000027 | 14.2765 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | | 5.87192 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | | 60.6591 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | | 70.4254 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | WBls:0000035 | 70.7686 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 16.5011 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | | 31.2253 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | | 34.2596 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | | 68.1688 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | WBls:0000041 | 10.357 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 11.9417 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | | 13.4838 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | 16.0062 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | | 19.1084 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | | 20.938 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956 |
| | | WBls:0000063 | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | | | 11.9956 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | | | 12.061 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 12.4022 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | | | 13.165 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | 15.437 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | Last_reviewed | 31 Aug 2016 10:21:27 | WBPerson4025 |
| | Remark | [gffnote] orthologous to C25F6.2 by best mutual match (eval=0) ; Ortholog C25F6.2 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP18089 ; Gene WBGene00035111 |
| | | [20080722 tb] Modified based on Jigsaw gene ContigchrX.briggsae.jigsaw.1827 |
| | | removed internal exons to follow homology data, and remove internal stops. [tb 20080925] |
| | | [160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG1454|c3_g2_i1-chrX-1'. | Curator_confirmed | WBPerson4025 |
| Method | curated |