CBG11896 | SMap | S_parent | Sequence | cb25.fpc2695 |
| Structure | Source_exons | 1 | 108 |
| | | 278 | 379 |
| | | 734 | 1264 |
| | | 1445 | 2665 |
| | | 2819 | 2917 |
| | | 2968 | 3075 |
| DB_info | Database | UniProt | UniProtAcc | A8XE93 |
| | | | UniProtId | A8XE93_CAEBR |
| | | KEGG | KEGG_id | 1.1.5.3 |
| | | TrEMBL | UniProtAcc | A8XE93 |
| | | UniProt_GCRP | UniProtAcc | A8XE93 |
| | | TREEFAM | TREEFAM_ID | TF300359 |
| | Protein_id | cb25.fpc2695 | CAP30965 | 1 |
| | DB_remark | CBR-GPDH-3 protein; contains similarity to Pfam domains PF01266 (FAD dependent oxidoreductase), PF13499 (EF-hand domain pair), PF16901 (C-terminal domain of alpha-glycerophosphate oxidase); contains similarity to Interpro domains IPR006076 (FAD dependent oxidoreductase), IPR031656 (Alpha-glycerophosphate oxidase, C-terminal), IPR011992 (EF-hand domain pair), IPR002048 (EF-hand domain), IPR038299 (Alpha-glycerophosphate oxidase, C-terminal domain superfamily), IPR000447 (FAD-dependent glycerol-3-phosphate dehydrogenase), IPR036188 (FAD/NAD(P)-binding domain superfamily) |
| Origin | From_laboratory | CB |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Confirmed |
| Visible | Gene | WBGene00032933 |
| | Corresponding_transcript | CBG11896.1 |
| | Corresponding_protein | CBP02898 |
| | Corresponding_oligo_set | GPL8303_CB6_WBGene00032933_A |
| | | GPL8303_CB6_WBGene00032933_B |
| | | GPL14143_CBG11896_1511-1570_0.913_22_C |
| | | GPL14143_CBG11896_1622-1681_0.883_46_A |
| | | GPL14143_CBG11896_1740-1799_0.942_3_B |
| | Matching_cDNA | briggsae_GG4227|c1_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL8303_CB6_WBGene00032933_A |
| | | GPL8303_CB6_WBGene00032933_B |
| | | GPL14143_CBG11896_1511-1570_0.913_22_C |
| | | GPL14143_CBG11896_1622-1681_0.883_46_A |
| | | GPL14143_CBG11896_1740-1799_0.942_3_B |
| | RNASeq_FPKM | WBls:0000002 | 31.4275 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | | 35.7512 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | | 51.2008 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | | 53.6515 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | WBls:0000003 | 20.2795 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | | 22.4944 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | | 22.581 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | WBls:0000004 | 24.1661 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | | 26.1266 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | 26.7351 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | | 28.0055 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | | 28.0497 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | WBls:0000024 | 26.4275 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | 29.7756 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | | 32.9283 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 33.8249 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | | 35.6711 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | | 37.4095 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | | 37.7147 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | | 45.4365 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 46.8246 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | 54.2593 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | WBls:0000027 | 12.5037 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | | 26.6845 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | | 39.9747 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | | 4.89932 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | WBls:0000035 | 51.1802 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 27.8131 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | | 41.8606 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | | 43.855 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | | 58.0052 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | WBls:0000041 | 64.1367 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | 65.9193 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 67.0925 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | | 68.0987 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | | 75.3302 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956 |
| | | | 78.6306 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | WBls:0000063 | 45.2579 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | | | 45.9323 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | | | 48.416 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | 49.3946 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 69.0475 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | | | 78.1776 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | Last_reviewed | 31 Aug 2016 10:21:13 | WBPerson4025 |
| | Remark | [gffnote] orthologous to T25G3.4 by best mutual match (eval=0) ; Ortholog T25G3.4 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP02898 ; Gene WBGene00032933 |
| | | [20080722 tb] Modified based on Jigsaw gene ContigchrI.briggsae.jigsaw.54 |
| | | [160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG4227|c1_g1_i1-chrI-1'. | Curator_confirmed | WBPerson4025 |
| Method | curated |