CBG07699 | SMap | S_parent | Sequence | cb25.fpc0829 |
| Structure | Source_exons (11) |
| DB_info | Database | UniProt | UniProtAcc | A8X496 |
| | | | UniProtId | A8X496_CAEBR |
| | | KEGG | KEGG_id | 6.4.1.2 |
| | | TrEMBL | UniProtAcc | A8X496 |
| | | UniProt_GCRP | UniProtAcc | A8X496 |
| | | TREEFAM | TREEFAM_ID | TF300061 |
| | Protein_id | cb25.fpc0829 | CAP27456 | 2 |
| | DB_remark | CBR-POD-2 protein; contains similarity to Pfam domains PF00289 (Biotin carboxylase, N-terminal domain), PF00364 (Biotin-requiring enzyme), PF01039 (Carboxyl transferase domain), PF02785 (Biotin carboxylase C-terminal domain), PF02786 (Carbamoyl-phosphate synthase L chain, ATP binding domain), PF08326 (Acetyl-CoA carboxylase, central region); contains similarity to Interpro domains IPR029045 (ClpP/crotonase-like domain superfamily), IPR005481 (Biotin carboxylase-like, N-terminal domain), IPR000089 (Biotin/lipoyl attachment), IPR016185 (Pre-ATP-grasp domain superfamily), IPR005482 (Biotin carboxylase, C-terminal), IPR034733 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta), IPR011053 (Single hybrid motif), IPR005479 (Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain), IPR013815 (ATP-grasp fold, subdomain 1), IPR013537 (Acetyl-CoA carboxylase, central domain), IPR011054 (Rudiment single hybrid motif) |
| Origin | From_laboratory | CB |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Partially_confirmed |
| Visible | Gene | WBGene00029664 |
| | Corresponding_transcript | CBG07699.1 |
| | Corresponding_protein | CBP32352 |
| | Corresponding_oligo_set | GPL8303_CB6_WBGene00029664_A |
| | | GPL14143_CBG07699_939-998_0.811_1_A |
| | | GPL14143_CBG07699_997-1056_0.810_2_C |
| | | GPL14143_CBG07699_5956-6015_0.791_67_B |
| | Matching_cDNA | briggsae_GG1594|c2_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL8303_CB6_WBGene00029664_A |
| | | GPL14143_CBG07699_939-998_0.811_1_A |
| | | GPL14143_CBG07699_997-1056_0.810_2_C |
| | | GPL14143_CBG07699_5956-6015_0.791_67_B |
| | RNASeq_FPKM | WBls:0000002 | 28.6687 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | | 31.7641 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | | 51.2953 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | | 53.1547 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | WBls:0000003 | 3.59725 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | | 3.87865 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | | 4.93417 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | WBls:0000004 | 34.5209 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | 35.3031 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | | 35.5668 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | | 36.7246 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | | 41.9664 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | WBls:0000024 | 38.9679 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | | 40.3239 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | | 42.7575 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 45.2122 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | | 48.2339 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 53.1396 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | 54.571 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | | 59.3434 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | | 69.4014 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | 78.5884 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | WBls:0000027 | 19.4633 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | | 43.532 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | | 45.5137 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | | 5.74169 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | WBls:0000035 | 72.8095 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 107.675 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | | 34.5891 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | | 40.4372 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | | 40.993 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | WBls:0000041 | 43.6871 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956 |
| | | | 49.4363 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | | 59.9843 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 65.0367 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | 65.7982 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | | 72.1878 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | WBls:0000063 | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | | | 26.8787 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | | | 61.3598 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | 64.2179 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | | | 65.4254 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 65.5251 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | Last_reviewed | 20 Jun 2018 17:07:47 | WBPerson4025 |
| | Remark | [gffnote] Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP01894 ; Gene WBGene00029664 |
| | | [20080722 tb] Modified based on Jigsaw gene ContigchrX.briggsae.jigsaw.3123 |
| | | [180620 gw3] This CDS has been inspected and looks satisfactory. | Curator_confirmed | WBPerson4025 |
| | | | From_analysis | RNASeq |
| Method | curated |