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WormBase Tree Display for CDS: CBG07699

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Name Class

CBG07699SMapS_parentSequencecb25.fpc0829
StructureSource_exons (11)
DB_infoDatabaseUniProtUniProtAccA8X496
UniProtIdA8X496_CAEBR
KEGGKEGG_id6.4.1.2
TrEMBLUniProtAccA8X496
UniProt_GCRPUniProtAccA8X496
TREEFAMTREEFAM_IDTF300061
Protein_idcb25.fpc0829CAP274562
DB_remarkCBR-POD-2 protein; contains similarity to Pfam domains PF00289 (Biotin carboxylase, N-terminal domain), PF00364 (Biotin-requiring enzyme), PF01039 (Carboxyl transferase domain), PF02785 (Biotin carboxylase C-terminal domain), PF02786 (Carbamoyl-phosphate synthase L chain, ATP binding domain), PF08326 (Acetyl-CoA carboxylase, central region); contains similarity to Interpro domains IPR029045 (ClpP/crotonase-like domain superfamily), IPR005481 (Biotin carboxylase-like, N-terminal domain), IPR000089 (Biotin/lipoyl attachment), IPR016185 (Pre-ATP-grasp domain superfamily), IPR005482 (Biotin carboxylase, C-terminal), IPR034733 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta), IPR011053 (Single hybrid motif), IPR005479 (Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain), IPR013815 (ATP-grasp fold, subdomain 1), IPR013537 (Acetyl-CoA carboxylase, central domain), IPR011054 (Rudiment single hybrid motif)
OriginFrom_laboratoryCB
SpeciesCaenorhabditis briggsae
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00029664
Corresponding_transcriptCBG07699.1
Corresponding_proteinCBP32352
Corresponding_oligo_setGPL8303_CB6_WBGene00029664_A
GPL14143_CBG07699_939-998_0.811_1_A
GPL14143_CBG07699_997-1056_0.810_2_C
GPL14143_CBG07699_5956-6015_0.791_67_B
Matching_cDNAbriggsae_GG1594|c2_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL8303_CB6_WBGene00029664_A
GPL14143_CBG07699_939-998_0.811_1_A
GPL14143_CBG07699_997-1056_0.810_2_C
GPL14143_CBG07699_5956-6015_0.791_67_B
RNASeq_FPKMWBls:000000228.6687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
31.7641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
51.2953From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
53.1547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
WBls:00000033.59725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
3.87865From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
4.93417From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
WBls:000000434.5209From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
35.3031From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
35.5668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
36.7246From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
41.9664From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:000002438.9679From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
40.3239From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
42.7575From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
45.2122From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
48.2339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
53.1396From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
54.571From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
59.3434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
69.4014From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
78.5884From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
WBls:000002719.4633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
43.532From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
45.5137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
5.74169From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
WBls:000003572.8095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038107.675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
34.5891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
40.4372From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
40.993From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004143.6871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
49.4363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
59.9843From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
65.0367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
65.7982From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
72.1878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
26.8787From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
61.3598From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
64.2179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
65.4254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
65.5251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
Last_reviewed20 Jun 2018 17:07:47WBPerson4025
Remark[gffnote] Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP01894 ; Gene WBGene00029664
[20080722 tb] Modified based on Jigsaw gene ContigchrX.briggsae.jigsaw.3123
[180620 gw3] This CDS has been inspected and looks satisfactory.Curator_confirmedWBPerson4025
From_analysisRNASeq
Methodcurated