CBG05716 | SMap | S_parent | Sequence | cb25.fpc0143a |
| Structure | Source_exons | 1 | 90 |
| | | 166 | 890 |
| | | 946 | 1885 |
| | | 1930 | 2763 |
| | | 2810 | 2920 |
| | | 2970 | 3111 |
| | | 3160 | 3248 |
| DB_info | Database | UniProt | UniProtAcc | A8X1T6 |
| | | | UniProtId | A8X1T6_CAEBR |
| | | TrEMBL | UniProtAcc | A8X1T6 |
| | | UniProt_GCRP | UniProtAcc | A8X1T6 |
| | | TREEFAM | TREEFAM_ID | TF105739 |
| | Protein_id | cb25.fpc0143a | CAP26596 | 2 |
| | DB_remark | CBR-RPN-1 protein; contains similarity to Pfam domains PF01851 (Proteasome/cyclosome repeat), PF17781 (RPN1 N-terminal domain), PF18051 (26S proteasome non-ATPase regulatory subunit RPN1 C-terminal); contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR040892 (RPN1, N-terminal), IPR016643 (26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit), IPR041433 (26S proteasome non-ATPase regulatory subunit RPN1, C-terminal), IPR016024 (Armadillo-type fold), IPR002015 (Proteasome/cyclosome repeat) |
| Origin | From_laboratory | CB |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Confirmed |
| Visible | Gene | WBGene00028111 |
| | Corresponding_transcript | CBG05716.1 |
| | Corresponding_protein | CBP01542 |
| | Corresponding_oligo_set | GPL8303_CB6_WBGene00028111_A |
| | | GPL8303_CB6_WBGene00028111_C |
| | | GPL14143_CBG05716_1611-1670_0.840_45_A |
| | | GPL14143_CBG05716_1693-1752_0.871_28_C |
| | | GPL14143_CBG05716_1829-1888_0.869_29_B |
| | Matching_cDNA | briggsae_GG6960|c7_g2_i1 | Inferred_automatically | transcript_builder.pl |
| | | briggsae_GG6960|c7_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | | R03987 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL8303_CB6_WBGene00028111_A |
| | | GPL8303_CB6_WBGene00028111_C |
| | | GPL14143_CBG05716_1611-1670_0.840_45_A |
| | | GPL14143_CBG05716_1693-1752_0.871_28_C |
| | | GPL14143_CBG05716_1829-1888_0.869_29_B |
| | RNASeq_FPKM | WBls:0000002 | 50.7871 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | | 77.6699 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | | 86.0265 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | | 95.1195 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | WBls:0000003 | 123.172 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | | 149.735 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | | 153.808 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | WBls:0000004 | 70.572 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | | 71.9371 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | 74.5737 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | | 74.7729 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | | 86.4365 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | WBls:0000024 | 14.1767 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | 15.3059 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 15.4555 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | | 25.3452 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | 30.9352 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | | 43.8045 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | | 50.2096 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | | 56.1464 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 67.7099 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | | 84.3888 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | WBls:0000027 | 22.6966 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | | 40.9902 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | | 6.40732 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | | 84.5623 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | WBls:0000035 | 75.5399 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 37.4365 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | | 54.3184 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | | 62.9473 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | | 64.5501 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | WBls:0000041 | 122.546 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | 125.627 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | | 129.326 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956 |
| | | | 129.994 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | | 137.931 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 98.1975 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | WBls:0000063 | 101.086 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | 102.05 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 102.596 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | | | 109.106 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | | | 176.433 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | | | 98.1885 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | Last_reviewed | 31 Aug 2016 10:21:19 | WBPerson4025 |
| | Remark | [gffnote] orthologous to T22D1.9 by best mutual match (eval=0) ; Ortholog T22D1.9 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP01542 ; Gene WBGene00028111 |
| | | [20080722 tb] Modified based on Jigsaw gene ContigchrIV.briggsae.jigsaw.1278 |
| | | [160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG6960|c7_g1_i1-chrIV-1b.extended'. | Curator_confirmed | WBPerson4025 |
| Method | curated |