| CBG04066 | SMap | S_parent | Sequence | cb25.fpc0071c2 |
|---|
| Structure | Source_exons | 1 | 237 |
| | | 284 | 921 |
| | | 966 | 1899 |
| | | 1945 | 2205 |
| DB_info | Database | UniProt | UniProtAcc | A8WW49 |
| | | | UniProtId | A8WW49_CAEBR |
| | | TrEMBL | UniProtAcc | A8WW49 |
| | | UniProt_GCRP | UniProtAcc | A8WW49 |
| | | TREEFAM | TREEFAM_ID | TF315228 |
| | Protein_id | cb25.fpc0071c2 | CAP24858 | 1 |
| | DB_remark | CBR-HMG-3 protein; contains similarity to Pfam domains PF00505 (HMG (high mobility group) box), PF03531 (Structure-specific recognition protein (SSRP1)), PF08512 (Histone chaperone Rttp106-like, middle domain), PF17292 (POB3-like N-terminal PH domain); contains similarity to Interpro domains IPR013719 (Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain), IPR011993 (PH-like domain superfamily), IPR000969 (FACT complex subunit SSRP1/POB3), IPR038167 (SSRP1 domain superfamily), IPR035417 (FACT complex subunit SSRP1/POB3, N-terminal PH domain), IPR036910 (High mobility group box domain superfamily), IPR009071 (High mobility group box domain), IPR024954 (SSRP1, dimerization domain) |
| Origin | From_laboratory | CB |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Confirmed |
| Visible | Gene | WBGene00026812 |
| | Corresponding_transcript | CBG04066.1 |
| | Corresponding_protein | CBP06638 |
| | Corresponding_oligo_set | GPL8303_CB6_WBGene00026812_A |
| | | GPL14143_CBG04066_146-205_0.812_113_B |
| | | GPL14143_CBG04066_396-455_0.809_121_C |
| | | GPL14143_CBG04066_1752-1811_0.945_6_A |
| | Matching_cDNA | briggsae_GG3503|c35_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL8303_CB6_WBGene00026812_A |
| | | GPL14143_CBG04066_146-205_0.812_113_B |
| | | GPL14143_CBG04066_396-455_0.809_121_C |
| | | GPL14143_CBG04066_1752-1811_0.945_6_A |
| | RNASeq_FPKM | WBls:0000002 | 47.5861 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | | 64.456 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | | 65.0558 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | | 67.6688 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | WBls:0000003 | 118.387 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | | 139.485 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | | 85.9916 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | WBls:0000004 | 20.9534 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | | 22.8133 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | | 23.2223 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | 24.3182 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | | 26.661 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | WBls:0000024 | 10.3225 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 3.48522 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | | 3.53373 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | 3.64565 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 4.5377 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | 5.65685 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | | 5.77665 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | | 8.80081 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | | 8.92154 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | | 9.55003 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | WBls:0000027 | 0.431498 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | | 1.21862 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | | 6.79471 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | | 6.97387 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | WBls:0000035 | 7.47538 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 11.7751 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | | 22.1931 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | | 26.0768 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | | 3.76537 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | WBls:0000041 | 133.376 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | | 141.799 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | 141.953 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 47.4129 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956 |
| | | | 70.2159 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | | 81.3596 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | WBls:0000063 | 48.034 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | 49.2974 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | | | 52.8673 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | | | 57.0616 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 76.3265 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | | | 89.5147 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | Last_reviewed | 31 Aug 2016 10:21:14 | WBPerson4025 |
| | Remark | [gffnote] orthologous to C32F10.5 by best match + synteny (eval=0) ; Ortholog C32F10.5 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP06638 ; Gene WBGene00026812 |
| | | [20080722 tb] Modified based on Jigsaw gene ContigchrI.briggsae.jigsaw.891 |
| | | [160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG3503|c35_g1_i1-chrI-1'. | Curator_confirmed | WBPerson4025 |
| Method | curated |
