WormBase Tree Display for CDS: C29F3.1
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C29F3.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C29F3 | |||
Structure | Source_exons | 1 | 210 | |||
253 | 993 | |||||
1229 | 1729 | |||||
1778 | 2301 | |||||
2656 | 2947 | |||||
DB_info | Database | TrEMBL | UniProtAcc | O17612 | ||
UniProt | UniProtAcc | O17612 | ||||
UniProt_GCRP | UniProtAcc | O17612 | ||||
AlphaFold | entry | O17612 | ||||
NCBI_protein | GI_number | GI:3874565 | ||||
TREEFAM | TREEFAM_ID | TF352288 | ||||
Protein_id | CHROMOSOME_V | CAB02799 | 1 | |||
DB_remark | ECH-1.1 protein; contains similarity to Pfam domains PF00378 (Enoyl-CoA hydratase/isomerase), PF00725 (3-hydroxyacyl-CoA dehydrogenase, C-terminal domain), PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain); contains similarity to Interpro domains IPR029045 (ClpP/crotonase-like domain superfamily), IPR008927 (6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily), IPR006108 (3-hydroxyacyl-CoA dehydrogenase, C-terminal), IPR012803 (Fatty acid oxidation complex, alpha subunit, mitochondrial), IPR036291 (NAD(P)-binding domain superfamily), IPR006176 (3-hydroxyacyl-CoA dehydrogenase, NAD binding), IPR001753 (Enoyl-CoA hydratase/isomerase) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00001150 | ||||
Corresponding_transcript | C29F3.1.1 | |||||
C29F3.1.2 | ||||||
Corresponding_protein | CE08435 | |||||
Corresponding_PCR_product | cenix:19-d8 | |||||
mv_C29F3.1 | ||||||
sjj_C29F3.1 | ||||||
Corresponding_oligo_set (20) | ||||||
Matching_cDNA (33) | ||||||
RNAi_result | WBRNAi00011330 | |||||
WBRNAi00092839 | ||||||
WBRNAi00092838 | ||||||
WBRNAi00029316 | ||||||
WBRNAi00114314 | ||||||
WBRNAi00102614 | ||||||
WBRNAi00041460 | ||||||
Microarray_results (20) | ||||||
Brief_identification | Enoyl-CoA hydratase | Accession_evidence | UniProt | TR:O17612 | ||
RNASeq_FPKM (74) | ||||||
Associated_feature | WBsf015299 | |||||
Method | curated |