WormBase Tree Display for CDS: C18A11.5b
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| C18A11.5b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C18A11 | |||
| Structure | Source_exons | 1 | 77 | |||
| 125 | 215 | |||||
| 260 | 445 | |||||
| 901 | 982 | |||||
| 1029 | 1182 | |||||
| 1229 | 1604 | |||||
| 2071 | 2358 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q23229 | ||
| UniProtIsoformAcc | Q23229-1 | |||||
| UniProt | UniProtAcc | Q23229 | ||||
| UniProt_GCRP | UniProtAcc | Q23229 | ||||
| AlphaFold | entry | Q23229 | ||||
| NCBI_protein | GI_number | GI:351050466 | ||||
| Protein_id | CHROMOSOME_X | CCD65063 | 1 | |||
| DB_remark | XOL-1 protein; contains similarity to Pfam domains PF09108 (Switch protein XOL-1, N-terminal), PF09109 (Switch protein XOL-1, GHMP-like); contains similarity to Interpro domains IPR020568 (Ribosomal protein uS5 domain 2-type superfamily), IPR015193 (Switch protein XOL-1, GHMP-like), IPR036554 (GHMP kinase, C-terminal domain superfamily), IPR015192 (Switch protein XOL-1, N-terminal), IPR014721 (Small ribosomal subunit protein uS5 domain 2-type fold, subgroup) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | AAA67049.1 | |||
| Visible | Gene | WBGene00006962 | ||||
| Corresponding_transcript | C18A11.5b.1 | |||||
| Corresponding_protein | CE35709 | |||||
| Corresponding_PCR_product | cenix:67-e10 | |||||
| mv_AAA67047 | ||||||
| mv_AAA67048 | ||||||
| mv_AAA67049 | ||||||
| sjj_C18A11.5 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | young_adult_Nanopore_Roach_81837 | Inferred_automatically | transcript_builder.pl | |||
| adult_Nanopore_Roach_66004 | Inferred_automatically | transcript_builder.pl | ||||
| yk495h7.5 | Inferred_automatically | transcript_builder.pl | ||||
| EC013997 | Inferred_automatically | transcript_builder.pl | ||||
| OSTR155C4_1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_299563 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG4426|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00095036 | |||||
| WBRNAi00010956 | ||||||
| WBRNAi00087455 | ||||||
| WBRNAi00027629 | ||||||
| WBRNAi00040876 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | XO lethal protein 1 | Accession_evidence | UniProt | SP:Q23229 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
