WormBase Tree Display for CDS: Y47D3A.17d
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| Y47D3A.17d | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y47D3A | |||
| Structure | Source_exons | 1 | 228 | |||
| 825 | 935 | |||||
| 1032 | 1187 | |||||
| 1838 | 2155 | |||||
| 2500 | 2672 | |||||
| 2718 | 2840 | |||||
| 2892 | 2989 | |||||
| 3421 | 3563 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A7DTF3 | ||
| UniProt | UniProtAcc | A7DTF3 | ||||
| AlphaFold | entry | A7DTF3 | ||||
| NCBI_protein | GI_number | GI:154147371 | ||||
| Protein_id | CHROMOSOME_III | CAO82060 | 1 | |||
| DB_remark | OBR-1 protein; contains similarity to Pfam domain PF01237 (Oxysterol-binding protein); contains similarity to Interpro domains IPR000648 (Oxysterol-binding protein), IPR037239 (Oxysterol-binding protein superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Feature_evidence | WBsf022832 | ||||
| Visible | Gene | WBGene00012930 | ||||
| Corresponding_transcript | Y47D3A.17d.1 | |||||
| Corresponding_protein | CE24330 | |||||
| Corresponding_PCR_product | cenix:332-d6 | |||||
| cenix:332-g9 | ||||||
| mv_Y47D3A.17 | ||||||
| sjj_Y47D3A.s | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA (26) | ||||||
| RNAi_result | WBRNAi00037156 | |||||
| WBRNAi00088748 | ||||||
| WBRNAi00088641 | ||||||
| WBRNAi00056739 | ||||||
| WBRNAi00020699 | ||||||
| WBRNAi00091935 | ||||||
| WBRNAi00056738 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Oxysterol-binding protein | Accession_evidence | UniProt | TR:A7DTF3 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 26 Jul 2011 00:00:00 | WBPerson1983 | ||||
| Remark | [070711 pad] Truncated isoform added based on TEC-RED SL1 data. | Curator_confirmed | WBPerson1983 | |||
| Feature_evidence | WBsf022832 | |||||
| Method | curated |
