WormBase Tree Display for CDS: T22H6.2b
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| T22H6.2b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T22H6 | |||
| Structure | Source_exons | 1 | 72 | |||
| 118 | 224 | |||||
| 982 | 1138 | |||||
| 2008 | 2129 | |||||
| 2295 | 2547 | |||||
| 2665 | 3040 | |||||
| 3113 | 3660 | |||||
| 3711 | 4173 | |||||
| 4279 | 4589 | |||||
| DB_info | Database | KEGG | KEGG_id | 2.7.2.11 | ||
| SwissProt | UniProtAcc | P54889 | ||||
| UniProtIsoformAcc | P54889-1 | |||||
| UniProt | UniProtAcc | P54889 | ||||
| UniProt_GCRP | UniProtAcc | P54889 | ||||
| AlphaFold | entry | P54889 | ||||
| NCBI_protein | GI_number | GI:413002252 | ||||
| TREEFAM | TREEFAM_ID | TF314372 | ||||
| Protein_id | CHROMOSOME_X | CAC35828 | 2 | |||
| DB_remark | ALH-13 protein; contains similarity to Pfam domains PF00171 (Aldehyde dehydrogenase family), PF00696 (Amino acid kinase family); contains similarity to Interpro domains IPR001057 (Glutamate/acetylglutamate kinase), IPR005715 (Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase), IPR016162 (Aldehyde dehydrogenase, N-terminal), IPR016161 (Aldehyde/histidinol dehydrogenase), IPR000965 (GPR domain), IPR001048 (Aspartate/glutamate/uridylate kinase), IPR016163 (Aldehyde dehydrogenase, C-terminal), IPR036393 (Acetylglutamate kinase-like superfamily), IPR005766 (Delta l-pyrroline-5-carboxylate synthetase), IPR015590 (Aldehyde dehydrogenase domain) | |||||
| Origin (2) | ||||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | AV186329 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00011938 | ||||
| Corresponding_transcript | T22H6.2b.1 | |||||
| Corresponding_protein | CE47964 | |||||
| Corresponding_PCR_product | cenix:76-g1 | |||||
| mv_T22H6.2 | ||||||
| sjj_T22H6.2 | ||||||
| Corresponding_oligo_set (18) | ||||||
| Matching_cDNA (35) | ||||||
| RNAi_result | WBRNAi00096926 | |||||
| WBRNAi00090699 | ||||||
| WBRNAi00096927 | ||||||
| WBRNAi00053869 | ||||||
| WBRNAi00035830 | ||||||
| WBRNAi00096986 | ||||||
| WBRNAi00009210 | ||||||
| WBRNAi00026362 | ||||||
| WBRNAi00071636 | ||||||
| Microarray_results (21) | ||||||
| Brief_identification | Glutamate 5-kinase | Accession_evidence | UniProt | SP:P54889 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 23 Feb 2001 00:00:00 | WBPerson1846 | ||||
| Remark | [010223 dl] New splice variant based on EST yk498c3 | Curator_confirmed | WBPerson1846 | |||
| Method | curated |
