WormBase Tree Display for CDS: T12B5.6c
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T12B5.6c | Evidence | Curator_confirmed | WBPerson1983 | |||
---|---|---|---|---|---|---|
Inferred_automatically | make_isoforms.pl | |||||
SMap | S_parent | Sequence | T12B5 | |||
Structure | Source_exons | 1 | 113 | |||
1689 | 2229 | |||||
2271 | 2483 | |||||
DB_info | Database (4) | |||||
Protein_id | CHROMOSOME_III | SAP35538 | 1 | |||
DB_remark | FBXA-55 protein; contains similarity to Pfam domain PF01827 (FTH domain); contains similarity to Interpro domains IPR002900 (Domain of unknown function DUF38/FTH, Caenorhabditis species), IPR040161 (F-box A protein FB224) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson1983 | ||||
Visible | Gene | WBGene00020453 | ||||
Corresponding_transcript | T12B5.6c.1 | |||||
Corresponding_protein | CE51680 | |||||
Corresponding_PCR_product | TH:328D5 | |||||
cenix:328-d5 | ||||||
mv_T12B5.6 | ||||||
sjj_T12B5.6 | ||||||
Corresponding_oligo_set (19) | ||||||
Matching_cDNA | adult_Nanopore_Roach_59691 | |||||
L3_Nanopore_Roach_56056 | ||||||
L1_Nanopore_Li_95922 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result | WBRNAi00035506 | |||||
WBRNAi00018634 | ||||||
WBRNAi00053190 | ||||||
WBRNAi00006619 | ||||||
Microarray_results (20) | ||||||
Brief_identification | DUF38 domain-containing protein | Accession_evidence | UniProt | TR:A0A163VTZ6 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 29 Mar 2016 17:10:23 | WBPerson1983 | ||||
Remark | [160104 pad] Created this isoform based on the RNASeq splice data. | Curator_confirmed | WBPerson1983 | |||
From_analysis | RNASeq_splice | |||||
Method | curated |