WormBase Tree Display for CDS: T10B5.5b
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T10B5.5b | SMap | S_parent | Sequence | T10B5 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 90 | |||
149 | 670 | |||||
1228 | 1983 | |||||
DB_info | Database | TrEMBL | UniProtAcc | Q86S29 | ||
UniProt | UniProtAcc | Q86S29 | ||||
AlphaFold | entry | Q86S29 | ||||
NCBI_protein | GI_number | GI:351059254 | ||||
Protein_id | CHROMOSOME_V | CCD74225 | 1 | |||
DB_remark | CCT-7 protein; contains similarity to Pfam domain PF00118 (TCP-1/cpn60 chaperonin family); contains similarity to Interpro domains IPR012720 (T-complex protein 1, eta subunit), IPR027410 (TCP-1-like chaperonin intermediate domain superfamily), IPR027413 (GroEL-like equatorial domain superfamily), IPR017998 (Chaperone tailless complex polypeptide 1 (TCP-1)), IPR027409 (GroEL-like apical domain superfamily), IPR002423 (Chaperonin Cpn60/GroEL/TCP-1 family) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Accession_evidence | EMBL | AU221339 | |||
Visible | Gene | WBGene00020391 | ||||
Corresponding_transcript | T10B5.5b.1 | |||||
Corresponding_protein | CE33316 | |||||
Corresponding_PCR_product | cenix:42-b5 | |||||
mv_T10B5.5 | ||||||
sjj_T10B5.5 | ||||||
smd_T10B5.1 | ||||||
Corresponding_oligo_set (15) | ||||||
Matching_cDNA | L1_Nanopore_Roach_94992 | |||||
L2_Nanopore_Roach_65740 | ||||||
L1_Nanopore_Roach_70198 | Inferred_automatically | transcript_builder.pl | ||||
L3_Nanopore_Roach_66330 | ||||||
L4_Nanopore_Roach_61938 | ||||||
RNAi_result (14) | ||||||
Microarray_results (17) | ||||||
Brief_identification | T-complex protein 1 subunit eta | Accession_evidence | UniProt | TR:Q86S29 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 11 Jun 2015 00:00:00 | WBPerson4025 | ||||
Remark | [150611 gw3] Took a look at this. There is EST and some RNAseq evidence of a retained final intron and there is a polyA site that supports this CDS. | Accession_evidence | NDB | AU221339 | ||
Curator_confirmed | WBPerson4025 | |||||
From_analysis | RNASeq | |||||
Method | curated |