WormBase Tree Display for CDS: R07H5.10a
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| R07H5.10a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_IV | |||
| Structure | Source_exons | 1 | 148 | |||
| 342 | 631 | |||||
| 678 | 922 | |||||
| 1469 | 1541 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | G5EFX5 | ||
| UniProt | UniProtAcc | G5EFX5 | ||||
| AlphaFold | entry | G5EFX5 | ||||
| NCBI_protein | GI_number | GI:313004727 | ||||
| Protein_id | CHROMOSOME_IV | CBK19464 | 1 | |||
| DB_remark | ZIP-6 protein; contains similarity to Pfam domain PF07716 (Basic region leucine zipper); contains similarity to Interpro domains IPR004827 (Basic-leucine zipper domain), IPR046347 (Basic-leucine zipper domain superfamily), IPR031106 (CCAAT/enhancer-binding protein C/EBP) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | From_analysis | RNASeq_Hillier_elegans | ||||
| Visible | Gene | WBGene00011130 | ||||
| Corresponding_transcript | R07H5.10a.1 | |||||
| Corresponding_protein | CE44611 | |||||
| Corresponding_PCR_product | cenix:97-a8 | |||||
| mv_R07H5.10 | ||||||
| sjj_R07H5.10 | ||||||
| Corresponding_oligo_set | 181517_at | |||||
| A_12_P104059 | ||||||
| Aff_R07H5.10 | ||||||
| GPL14144_R07H5.10_191-250_0.917_3_C | ||||||
| GPL14144_R07H5.10_368-427_0.925_2_B | ||||||
| GPL14144_R07H5.10_733-792_0.957_1_A | ||||||
| GPL3518_CE28637 | ||||||
| GPL8304_CE_WBGene00011130_A | ||||||
| GPL8673_R07H5_10P00139 | ||||||
| GPL8673_R07H5_10P00423 | ||||||
| Matching_cDNA | young_adult_Nanopore_Roach_44070 | Inferred_automatically | transcript_builder.pl | |||
| L3_Nanopore_Roach_36760 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_43153 | Inferred_automatically | transcript_builder.pl | ||||
| OSTVL00011130 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00017568 | |||||
| WBRNAi00107258 | ||||||
| WBRNAi00051507 | ||||||
| Microarray_results (11) | ||||||
| Brief_identification | BZIP domain-containing protein | Accession_evidence | UniProt | TR:G5EFX5 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 15 Apr 2014 00:00:00 | WBPerson4025 | ||||
| Remark | [010727 kj] Used gaze prediction to avoid CeRep overlap. | |||||
| [090223 gw3] Changed the 5' end and removed penultimate exon to match the jigsaw prediction and the tiling aray expression data. | Curator_confirmed | WBPerson4025 | ||||
| [100209 gw3] Truncated the 5' end based on the SL1 feature. | Feature_evidence | WBsf128608 | ||||
| Method | curated |
