WormBase Tree Display for CDS: K08H10.1b

K08H10.1b Evidence: Inferred_automatically: make_isoforms.pl
  SMap: S_parent: Sequence: CHROMOSOME_V
  Structure: Source_exons: 1 96
      141 923
      972 1538
      1634 1972
      2997 4337
      4392 4457
      5899 5979
      7051 7158
  DB_info: Database: TrEMBL UniProtAcc G5EDH9
      UniProt UniProtAcc G5EDH9
      AlphaFold entry G5EDH9
      NCBI_protein GI_number GI:320202908
    Protein_id: CHROMOSOME_V CBZ01819 1
    DB_remark: LEA-1 protein; contains similarity to Pfam domain PF01442 (Apolipoprotein A1/A4/E domain); contains similarity to Interpro domains IPR023121 (ApoC-II domain superfamily), IPR000074 (Apolipoprotein A/E)
  Origin: From_laboratory: HX
    Species: Caenorhabditis elegans
  Properties: Coding: CDS
      Prediction_status: Confirmed
    Isoform: Feature_evidence: WBsf008479
      From_analysis: RNASeq_Hillier_elegans
  Visible: Gene: WBGene00002263
    Corresponding_transcript: K08H10.1b.1
    Corresponding_protein: CE45749
    Corresponding_PCR_product: cenix:164-f1
      cenix:18-a8
      cenix:29-b11
      mv_K08H10.1
      mv_K08H10.2b
      sjj2_K08H10.1.1
      sjj_K08H10.1
      sjj_K08H10.2
    Corresponding_oligo_set (21)
    Matching_cDNA (42)
    RNAi_result (14)
    Microarray_results (23)
    Brief_identification: Plant Late Embryo Abundant (LEA) related Accession_evidence: UniProt TR:G5EDH9
    RNASeq_FPKM (74)
    Last_reviewed: 16 Apr 2012 00:00:00 WBPerson4025
    Remark: [110105 gw3] Merged K08H10.1 and K08H10.2 because they are linked by a lot of RNASeq alignments and they contain the same very repetitive biased sequence. This 'b' isoform appears to be the major transcript, judging by the RNASeq wiggle plots.
  Method: curated