WormBase Tree Display for CDS: F58B6.3d
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F58B6.3d | SMap | S_parent | Sequence | F58B6 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 111 | |||
225 | 308 | |||||
1586 | 1723 | |||||
2654 | 2725 | |||||
2929 | 3053 | |||||
6377 | 7157 | |||||
11221 | 11283 | |||||
11338 | 11469 | |||||
12820 | 12966 | |||||
13301 | 13393 | |||||
DB_info | Database | TrEMBL | UniProtAcc | A0A8S4SK97 | ||
UniProt | UniProtAcc | A0A8S4SK97 | ||||
AlphaFold | entry | A0A8S4SK97 | ||||
Protein_id | CHROMOSOME_III | CAH2662236 | 1 | |||
DB_remark | PAR-2 protein; contains similarity to Pfam domain PF00097 (Zinc finger, C3HC4 type (RING finger)); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR018957 (Zinc finger, C3HC4 RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR042755 (E3 ubiquitin-protein ligase COP1) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson1983 | ||||
Visible | Gene | WBGene00003917 | ||||
Corresponding_transcript | F58B6.3d.1 | |||||
Corresponding_protein | CE54548 | |||||
Corresponding_PCR_product | cenix:179-b5 | |||||
cenix:238-a3 | ||||||
mv_AAA62312 | ||||||
sjj_F58B6.3 | ||||||
smd_F58B6.3:2 | ||||||
Corresponding_oligo_set (17) | ||||||
Matching_cDNA | RST5_372862 | Inferred_automatically | transcript_builder.pl | |||
RNAi_result (96) | ||||||
Microarray_results (20) | ||||||
Brief_identification | RING-type domain-containing protein | Accession_evidence | UniProt | TR:A0A8S4SK97 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 09 Dec 2021 23:46:35 | WBPerson1983 | ||||
Remark | [211209 pad] This structure has been created based on the RNASeq data. | Curator_confirmed | WBPerson1983 | |||
From_analysis | RNASeq | |||||
Associated_feature | WBsf019606 | |||||
Method | curated |