WormBase Tree Display for CDS: F57H12.2
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F57H12.2 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F57H12 | |||
Structure | Source_exons | 1 | 224 | |||
425 | 500 | |||||
889 | 984 | |||||
1040 | 1189 | |||||
1236 | 1400 | |||||
1446 | 2066 | |||||
DB_info | Database (5) | |||||
Protein_id | CHROMOSOME_IV | CCD69769 | 2 | |||
DB_remark | UNC-24 protein; contains similarity to Pfam domains PF01145 (SPFH domain / Band 7 family), PF02036 (SCP-2 sterol transfer family); contains similarity to Interpro domains IPR001972 (Stomatin/HflK family), IPR043202 (Band-7 stomatin-like), IPR036013 (Band 7/SPFH domain superfamily), IPR001107 (Band 7 domain), IPR003033 (SCP2 sterol-binding domain), IPR036527 (SCP2 sterol-binding domain superfamily) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00006761 | ||||
Corresponding_transcript | F57H12.2.1 | |||||
Corresponding_protein | CE52881 | |||||
Corresponding_PCR_product | cenix:228-b2 | |||||
mv_AAB06496 | ||||||
sjj_F57H12.2 | ||||||
Corresponding_oligo_set (19) | ||||||
Matching_cDNA | L2_Nanopore_Roach_85082 | Inferred_automatically | transcript_builder.pl | |||
L1_Nanopore_Roach_85577 | Inferred_automatically | transcript_builder.pl | ||||
male_Nanopore_Roach_45775 | ||||||
L1_Nanopore_Roach_40193 | ||||||
L2_Nanopore_Roach_41307 | ||||||
L1_Nanopore_Li_287558 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result (12) | ||||||
Microarray_results (20) | ||||||
Brief_identification | Band 7 domain-containing protein | Accession_evidence | UniProt | TR:Q7KPQ9 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 03 Oct 2018 14:43:06 | WBPerson4025 | ||||
Remark | [181003 gw3] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4025 | |||
From_analysis | RNASeq | |||||
Method | curated |