WormBase Tree Display for CDS: F52A8.6c
expand all nodes | collapse all nodes | view schema
| F52A8.6c | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F07A5 | |||
| Structure | Source_exons | 1 | 99 | |||
| 150 | 573 | |||||
| 673 | 749 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q19143 | ||
| UniProtIsoformAcc | Q19143-1 | |||||
| UniProt | UniProtAcc | Q19143 | ||||
| UniProt_GCRP | UniProtAcc | Q19143 | ||||
| AlphaFold | entry | Q19143 | ||||
| NCBI_protein | GI_number | GI:14530393 | ||||
| Protein_id | CHROMOSOME_I | CAC42277 | 1 | |||
| DB_remark | KBRL-1 protein; contains similarity to Pfam domain PF00071 (Ras family); contains similarity to Interpro domains IPR001806 (Small GTPase), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR005225 (Small GTP-binding protein domain), IPR042227 (NF-kappa-B inhibitor-interacting Ras-like protein) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Feature_evidence | WBsf022625 | ||||
| Visible | Gene | WBGene00009919 | ||||
| Corresponding_transcript | F52A8.6c.1 | |||||
| Corresponding_protein | CE28028 | |||||
| Corresponding_PCR_product | cenix:148-c3 | |||||
| cenix:24-c10 | ||||||
| mv_F52A8.6 | ||||||
| sjj_F52A8.6 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA | young_adult_Nanopore_Roach_110451 | |||||
| L2_Nanopore_Roach_87478 | ||||||
| L1_Nanopore_Roach_88119 | ||||||
| adult_Nanopore_Roach_90970 | ||||||
| adult_Nanopore_Roach_34311 | ||||||
| adult_Nanopore_Roach_45091 | ||||||
| RNAi_result | WBRNAi00003733 | |||||
| WBRNAi00032576 | ||||||
| WBRNAi00047911 | ||||||
| WBRNAi00047910 | ||||||
| WBRNAi00116958 | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | NF-kappa-B inhibitor-interacting Ras-like protein | Accession_evidence | UniProt | SP:Q19143 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 03 Aug 2016 10:44:31 | WBPerson1983 | ||||
| Remark | [060328 gw3] Added isoform based on SL1 site and the following suggestion by Marek Elias: "Compared to its orthologs in other metazoans, the currently predicted C. elegans protein possesses a striking N-terminal extension. In my view (which seems to be supported by ESTs) the encoded protein is shorter (leaving out the N-terminal extension) The same gene model has recently been released by the SwissProt folks." | Person_evidence | WBPerson4720 | |||
| Curator_confirmed | WBPerson4025 | |||||
| Feature_evidence | WBsf022625 | |||||
| Method | curated |
