WormBase Tree Display for CDS: F35B12.4
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F35B12.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F35B12 | |||
Structure | Source_exons | 1 | 21 | |||
151 | 418 | |||||
468 | 584 | |||||
634 | 830 | |||||
DB_info | Database (6) | |||||
Protein_id | CHROMOSOME_V | CAA98461 | 2 | |||
DB_remark | PIIT-1 protein; contains similarity to Pfam domain PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain); contains similarity to Interpro domains IPR036880 (Pancreatic trypsin inhibitor Kunitz domain superfamily), IPR002223 (Pancreatic trypsin inhibitor Kunitz domain), IPR006150 (Cysteine-rich repeat) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00009384 | ||||
Corresponding_transcript | F35B12.4.1 | |||||
Corresponding_protein | CE52793 | |||||
Corresponding_PCR_product | cenix:116-b6 | |||||
mv_F35B12.4 | ||||||
sjj_F35B12.4 | ||||||
smd_F35B12.4 | ||||||
Corresponding_oligo_set (16) | ||||||
Matching_cDNA | YA_Nanopore_Li_64897 | Inferred_automatically | transcript_builder.pl | |||
OSTF163D6_1 | Inferred_automatically | transcript_builder.pl | ||||
EM_Nanopore_Li_76431 | Inferred_automatically | transcript_builder.pl | ||||
OSTR163D6_1 | Inferred_automatically | transcript_builder.pl | ||||
elegans_PE_SS_GG1093|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_62929 | Inferred_automatically | transcript_builder.pl | ||||
L1_Nanopore_Li_63456 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result | WBRNAi00014285 | |||||
WBRNAi00046273 | ||||||
WBRNAi00031743 | ||||||
WBRNAi00089068 | ||||||
Microarray_results (19) | ||||||
Brief_identification | BPTI/Kunitz inhibitor domain-containing protein | Accession_evidence | UniProt | TR:Q20008 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 28 Aug 2018 10:49:13 | WBPerson4025 | ||||
Remark | [180828 gw3] This CDS has been updated based on the RNAseq data. The first exon has been truncated to match the RNASeq evidence for the start of transcription. | Curator_confirmed | WBPerson4025 | |||
From_analysis | RNASeq | |||||
Method | curated |