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WormBase Tree Display for CDS: F35B12.4

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Name Class

F35B12.4EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceF35B12
StructureSource_exons121
151418
468584
634830
DB_infoDatabase (6)
Protein_idCHROMOSOME_VCAA984612
DB_remarkPIIT-1 protein; contains similarity to Pfam domain PF00014 (Kunitz/Bovine pancreatic trypsin inhibitor domain); contains similarity to Interpro domains IPR036880 (Pancreatic trypsin inhibitor Kunitz domain superfamily), IPR002223 (Pancreatic trypsin inhibitor Kunitz domain), IPR006150 (Cysteine-rich repeat)
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00009384
Corresponding_transcriptF35B12.4.1
Corresponding_proteinCE52793
Corresponding_PCR_productcenix:116-b6
mv_F35B12.4
sjj_F35B12.4
smd_F35B12.4
Corresponding_oligo_set (16)
Matching_cDNAYA_Nanopore_Li_64897Inferred_automaticallytranscript_builder.pl
OSTF163D6_1Inferred_automaticallytranscript_builder.pl
EM_Nanopore_Li_76431Inferred_automaticallytranscript_builder.pl
OSTR163D6_1Inferred_automaticallytranscript_builder.pl
elegans_PE_SS_GG1093|c0_g1_i1Inferred_automaticallytranscript_builder.pl
L1_Nanopore_Li_62929Inferred_automaticallytranscript_builder.pl
L1_Nanopore_Li_63456Inferred_automaticallytranscript_builder.pl
RNAi_resultWBRNAi00014285
WBRNAi00046273
WBRNAi00031743
WBRNAi00089068
Microarray_results (19)
Brief_identificationBPTI/Kunitz inhibitor domain-containing proteinAccession_evidenceUniProtTR:Q20008
RNASeq_FPKM (74)
Last_reviewed28 Aug 2018 10:49:13WBPerson4025
Remark[180828 gw3] This CDS has been updated based on the RNAseq data. The first exon has been truncated to match the RNASeq evidence for the start of transcription.Curator_confirmedWBPerson4025
From_analysisRNASeq
Methodcurated