WormBase Tree Display for CDS: F29B9.5
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| F29B9.5 | Evidence | Curator_confirmed | WBPerson4025 | |||
|---|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | |||||
| SMap | S_parent | Sequence | F29B9 | |||
| Structure | Source_exons | 1 | 81 | |||
| 131 | 196 | |||||
| 251 | 396 | |||||
| 451 | 613 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q95Q57 | ||
| UniProt | UniProtAcc | Q95Q57 | ||||
| UniProt_GCRP | UniProtAcc | Q95Q57 | ||||
| AlphaFold | entry | Q95Q57 | ||||
| NCBI_protein | GI_number | GI:548932220 | ||||
| TREEFAM | TREEFAM_ID | TF331873 | ||||
| Protein_id | CHROMOSOME_IV | CCD70228 | 2 | |||
| DB_remark | contains similarity to Pfam domain PF13905 (Thioredoxin-like); contains similarity to Interpro domains IPR029519 (Nucleoredoxin-like protein 2), IPR012336 (Thioredoxin-like fold), IPR036249 (Thioredoxin-like superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00017921 | ||||
| Corresponding_transcript | F29B9.5.1 | |||||
| Corresponding_protein | CE48706 | |||||
| Corresponding_PCR_product | cenix:166-f2 | |||||
| mv_F29B9.5 | ||||||
| sjj_F29B9.5 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA (16) | ||||||
| RNAi_result | WBRNAi00001452 | |||||
| WBRNAi00065393 | ||||||
| WBRNAi00082801 | ||||||
| WBRNAi00031562 | ||||||
| WBRNAi00082802 | ||||||
| WBRNAi00045902 | ||||||
| WBRNAi00014095 | ||||||
| WBRNAi00065390 | ||||||
| Microarray_results (16) | ||||||
| Brief_identification | Thioredoxin domain-containing protein | Accession_evidence | UniProt | TR:Q95Q57 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 26 Sep 2013 00:00:00 | WBPerson4025 | ||||
| Remark | yk89a8.3 was not assigned to this gene eventhough it overlaps the 5' end because it is a 3' read and its 5' partner is not on this clone | |||||
| [000707 db] added one intron based on data communicated by Alessandro Guffanti | Curator_confirmed | WBPerson1848 | ||||
| [010601 js] this had been merged into F29B9.6 but should not have been; resurrected - | Curator_confirmed | WBPerson615 | ||||
| WBPerson1848 | ||||||
| [130924 gw3] Autoconversion from AG1201_F29B9.5.T2. Truncated the 5' end based on the RNASeq data and the SL1 site. | Curator_confirmed | WBPerson4025 | ||||
| Feature_evidence | WBsf128519 | |||||
| From_analysis | RNASeq_Hillier_elegans | |||||
| Method | curated |
