WormBase Tree Display for CDS: C34F11.3a
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| C34F11.3a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C34F11 | |||
| Structure | Source_exons (12) | |||||
| DB_info | Database | KEGG | KEGG_id | 3.5.4.6 | ||
| TrEMBL | UniProtAcc | H2KZ18 | ||||
| UniProt | UniProtAcc | H2KZ18 | ||||
| AlphaFold | entry | H2KZ18 | ||||
| NCBI_protein | GI_number | GI:351058387 | ||||
| Protein_id | CHROMOSOME_II | CCD65832 | 1 | |||
| DB_remark | AMPD-1 protein; contains similarity to Pfam domain PF19326 (AMP deaminase); contains similarity to Interpro domains IPR032466 (Metal-dependent hydrolase), IPR006329 (AMP deaminase) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | BJ112269 | |||
| Visible | Gene | WBGene00016415 | ||||
| Corresponding_transcript | C34F11.3a.1 | |||||
| Corresponding_protein | CE44871 | |||||
| Corresponding_PCR_product | cenix:146-d5 | |||||
| cenix:203-h3 | ||||||
| mv_C34F11.3 | ||||||
| sjj_C34F11.3 | ||||||
| Corresponding_oligo_set (23) | ||||||
| Matching_cDNA (144) | ||||||
| RNAi_result | WBRNAi00041909 | |||||
| WBRNAi00076196 | ||||||
| WBRNAi00041910 | ||||||
| WBRNAi00011616 | ||||||
| WBRNAi00024736 | ||||||
| WBRNAi00027209 | ||||||
| Microarray_results (32) | ||||||
| Brief_identification | AMP deaminase | Accession_evidence | UniProt | TR:H2KZ18 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 18 Sep 2017 16:54:23 | WBPerson1983 | ||||
| Remark | [20021021 po] removed first two exons(18035 18192 and 18259 18339) based on EST data(yk1054c08.5) | Curator_confirmed | WBPerson1867 | |||
| [20021021 po] also removed exon three(18871 18964) based on EST data(yk1152h07.5) | Curator_confirmed | WBPerson1867 | ||||
| [20021021 po] SL1 trans-spliced site(18870 18871); see yk1054c08.5 | Curator_confirmed | WBPerson1867 | ||||
| [141027 gw3] The cassette exon splicing in the 5th and 6th exon of these isoforms has been confirmed by RT-PCR in this paper. | Paper_evidence | WBPaper00045789 | ||||
| Curator_confirmed | WBPerson4025 | |||||
| Associated_feature | WBsf015472 | |||||
| Method | curated |
