WormBase Tree Display for CDS: C18E9.10e
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| C18E9.10e | SMap | S_parent | Sequence | CHROMOSOME_II | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 40 | |||
| 1206 | 1252 | |||||
| 1664 | 1749 | |||||
| 2043 | 2160 | |||||
| 6666 | 6724 | |||||
| 8400 | 8508 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A2K5ATL1 | ||
| UniProt | UniProtAcc | A0A2K5ATL1 | ||||
| AlphaFold | entry | A0A2K5ATL1 | ||||
| NCBI_protein | GI_number | GI:1346713802 | ||||
| Protein_id | CHROMOSOME_II | SPC47107 | 1 | |||
| DB_remark | SFTD-3 protein; contains similarity to Pfam domain PF04178 (Got1/Sft2-like family); contains similarity to Interpro domains IPR007305 (Vesicle transport protein, Got1/SFT2-like), IPR011691 (Vesicle transport protein SFT2) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Visible | Gene | WBGene00007690 | ||||
| Corresponding_transcript | C18E9.10e.1 | |||||
| Corresponding_protein | CE52525 | |||||
| Corresponding_PCR_product | cenix:247-a8 | |||||
| mv_C18E9.10 | ||||||
| sjj_C18E9.10 | ||||||
| Corresponding_oligo_set | 181816_s_at | |||||
| A_12_P107089 | ||||||
| GPL13394_WBGene00007690 | ||||||
| GPL13914_C18E9.10 | ||||||
| GPL14144_C18E9.10_436-495_0.953_1_A | ||||||
| GPL3518_CE20520 | ||||||
| GPL8304_CE_WBGene00007690_A | ||||||
| GPL8673_C18E9_10P00131 | ||||||
| GPL8673_C18E9_10P00338 | ||||||
| GPL8673_C18E9_10P00570 | ||||||
| Matching_cDNA | L4_Nanopore_Roach_57922 | |||||
| adult_Nanopore_Roach_82520 | ||||||
| L1_Nanopore_Roach_6786 | ||||||
| adult_Nanopore_Roach_44506 | ||||||
| RNAi_result | WBRNAi00095499 | |||||
| WBRNAi00000934 | ||||||
| WBRNAi00011006 | ||||||
| WBRNAi00076152 | ||||||
| WBRNAi00029081 | ||||||
| Microarray_results (11) | ||||||
| Brief_identification | Vesicle transport protein | Accession_evidence | UniProt | TR:A0A2K5ATL1 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 08 Jan 2018 12:06:32 | WBPerson1983 | ||||
| Remark | [180108 pad] This structure has been created based on the RNASeq data. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeq | |||||
| [180108 pad] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson1983 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
