WormBase Tree Display for Gene: WBGene00007690
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| WBGene00007690 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sftd-3 | Person_evidence | WBPerson87 | |||||
| Sequence_name | C18E9.10 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_C18E9.10 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sftd-3 | ||||||||
| DB_info | Database | AceView | gene | 2J246 | |||||
| WormQTL | gene | WBGene00007690 | |||||||
| WormFlux | gene | WBGene00007690 | |||||||
| NDB | locus_tag | CELE_C18E9.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007690|UniProtKB=A0A2K5ATK2 | |||||||
| family | PTHR23137 | ||||||||
| NCBI | gene | 174427 | |||||||
| RefSeq | protein | NM_063504.4 | |||||||
| NM_001381545.1 | |||||||||
| NM_001361870.4 | |||||||||
| NM_001361868.3 | |||||||||
| TrEMBL | UniProtAcc | A0A2K5ATL4 | |||||||
| G5EDD5 | |||||||||
| A0A2K5ATL1 | |||||||||
| A0A2K5ATK0 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EDD5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 11 Jul 2014 14:45:03 | WBPerson2970 | Name_change | CGC_name | sftd-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sftd | ||||||||
| Allele (120) | |||||||||
| Strain | WBStrain00051180 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003016 | ||||||||
| 00003017 | |||||||||
| 00003018 | |||||||||
| 00003019 | |||||||||
| 00003020 | |||||||||
| 00003021 | |||||||||
| 00115765 | |||||||||
| 00115766 | |||||||||
| Contained_in_operon | CEOP2400 | ||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00009191 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in protein transport and vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of human SFT2D3 (SFT2 domain containing 3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C18E9.10a | |||||||
| C18E9.10c | |||||||||
| C18E9.10d | |||||||||
| C18E9.10e | |||||||||
| Corresponding_CDS_history | C18E9.10b:wp275 | ||||||||
| Corresponding_transcript | C18E9.10a.1 | ||||||||
| C18E9.10c.1 | |||||||||
| C18E9.10d.1 | |||||||||
| C18E9.10e.1 | |||||||||
| Other_sequence (18) | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1024730 | ||||||||
| Expr1033323 | |||||||||
| Expr1144992 | |||||||||
| Expr2015792 | |||||||||
| Expr2034025 | |||||||||
| Drives_construct | WBCnstr00033551 | ||||||||
| Construct_product | WBCnstr00033551 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (67) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | II | Position | 0.938037 | |||||
| Positive | Positive_clone | C18E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
