WormBase Tree Display for CDS: C18E9.10d
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| C18E9.10d | SMap | S_parent | Sequence | CHROMOSOME_II | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 78 | |||
| 4584 | 4642 | |||||
| 6318 | 6426 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A2K5ATK0 | ||
| UniProt | UniProtAcc | A0A2K5ATK0 | ||||
| AlphaFold | entry | A0A2K5ATK0 | ||||
| NCBI_protein | GI_number | GI:1346713801 | ||||
| Protein_id | CHROMOSOME_II | SPC47106 | 1 | |||
| DB_remark | SFTD-3 protein; contains similarity to Pfam domain PF04178 (Got1/Sft2-like family); contains similarity to Interpro domains IPR007305 (Vesicle transport protein, Got1/SFT2-like), IPR011691 (Vesicle transport protein SFT2) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Feature_evidence | WBsf147495 | |||||
| Visible | Gene | WBGene00007690 | ||||
| Corresponding_transcript | C18E9.10d.1 | |||||
| Corresponding_protein | CE52531 | |||||
| Corresponding_PCR_product | mv_C18E9.10 | |||||
| sjj_C18E9.10 | ||||||
| Corresponding_oligo_set | 181816_s_at | |||||
| A_12_P107089 | ||||||
| GPL13394_WBGene00007690 | ||||||
| GPL13914_C18E9.10 | ||||||
| GPL14144_C18E9.10_436-495_0.953_1_A | ||||||
| GPL8304_CE_WBGene00007690_A | ||||||
| GPL8673_C18E9_10P00570 | ||||||
| Matching_cDNA (19) | ||||||
| RNAi_result | WBRNAi00095499 | |||||
| WBRNAi00000934 | ||||||
| WBRNAi00011006 | ||||||
| WBRNAi00076152 | ||||||
| WBRNAi00029081 | ||||||
| Microarray_results | SMD_C18E9.10 | |||||
| 181816_s_at | ||||||
| A_12_P107089 | ||||||
| GPL13394_WBGene00007690 | ||||||
| GPL13914_C18E9.10 | ||||||
| GPL14144_C18E9.10_436-495_0.953_1_A | ||||||
| GPL8304_CE_WBGene00007690_A | ||||||
| GPL8673_C18E9_10P00570 | ||||||
| Brief_identification | Vesicle transport protein | Accession_evidence | UniProt | TR:A0A2K5ATK0 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 08 Jan 2018 12:02:29 | WBPerson1983 | ||||
| Remark | [180108 pad] This structure has been created based on the RNASeq data. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
