WormBase Tree Display for CDS: C08G5.4c
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| C08G5.4c | Evidence | Curator_confirmed | WBPerson1983 | |||
|---|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | |||||
| SMap | S_parent | Sequence | C08G5 | |||
| Structure | Source_exons | 1 | 162 | |||
| 211 | 325 | |||||
| 802 | 1118 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A0S4XQZ9 | ||
| UniProt | UniProtAcc | A0A0S4XQZ9 | ||||
| AlphaFold | entry | A0A0S4XQZ9 | ||||
| NCBI_protein | GI_number | GI:969855382 | ||||
| Protein_id | CHROMOSOME_II | CUV67061 | 1 | |||
| DB_remark | SNT-6 protein; contains similarity to Pfam domain PF00168 (C2 domain); contains similarity to Interpro domains IPR001565 (Synaptotagmin), IPR035892 (C2 domain superfamily), IPR000008 (C2 domain) | |||||
| Origin (2) | ||||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Feature_evidence | WBsf147680 | |||||
| Visible | Gene | WBGene00004926 | ||||
| Corresponding_transcript | C08G5.4c.1 | |||||
| Corresponding_protein | CE51225 | |||||
| Corresponding_PCR_product | cenix:203-b10 | |||||
| mv_C08G5.4 | ||||||
| sjj_C08G5.4 | ||||||
| Corresponding_oligo_set | 180513_at | |||||
| A_12_P109338 | ||||||
| Aff_C08G5.4 | ||||||
| GPL13394_WBGene00004926 | ||||||
| GPL13914_C08G5.4 | ||||||
| GPL3518_CE19693 | ||||||
| GPL8304_CE_WBGene00004926_A | ||||||
| GPL8673_C08G5_4P00769 | ||||||
| GPL9450_C08G5.4 | ||||||
| cea2.i.08875 | ||||||
| Matching_cDNA | male_Nanopore_Roach_156139 | |||||
| L1_Nanopore_Roach_103445 | ||||||
| L1_Nanopore_Roach_31637 | ||||||
| L3_Nanopore_Roach_85772 | ||||||
| L2_Nanopore_Roach_102349 | ||||||
| L2_Nanopore_Roach_89051 | ||||||
| L1_Nanopore_Roach_90223 | ||||||
| L2_Nanopore_Roach_90710 | ||||||
| L3_Nanopore_Roach_97098 | ||||||
| L2_Nanopore_Roach_90158 | ||||||
| RNAi_result | WBRNAi00010486 | |||||
| WBRNAi00028696 | ||||||
| WBRNAi00112399 | ||||||
| WBRNAi00040137 | ||||||
| Microarray_results (11) | ||||||
| Brief_identification | C2 domain-containing protein | Accession_evidence | UniProt | TR:A0A0S4XQZ9 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 28 Oct 2015 00:00:00 | WBPerson1983 | ||||
| Remark | [150604 pad] Created this isoform based on the RNASeq splice data and the SL1 site. | Curator_confirmed | WBPerson1983 | |||
| Feature_evidence | WBsf147680 | |||||
| From_analysis | RNASeq | |||||
| Method | curated |
