WormBase Tree Display for CDS: C05C8.7
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C05C8.7 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C05C8 | |||
Structure | Source_exons | 1 | 129 | |||
1240 | 1428 | |||||
1475 | 1616 | |||||
1972 | 2153 | |||||
2599 | 3188 | |||||
3421 | 3592 | |||||
DB_info | Database (7) | |||||
Protein_id | CHROMOSOME_V | CCD63093 | 1 | |||
DB_remark | contains similarity to Pfam domains PF20511 (Phosphomannose isomerase type I, catalytic domain), PF20512 (Phosphomannose isomerase type I, helical insertion domain); contains similarity to Interpro domains IPR046458 (Phosphomannose isomerase type I, helical insertion domain), IPR016305 (Mannose-6-phosphate isomerase), IPR011051 (RmlC-like cupin domain superfamily), IPR001250 (Mannose-6-phosphate isomerase, type I), IPR046457 (Phosphomannose isomerase type I, catalytic domain), IPR014710 (RmlC-like jelly roll fold) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00015464 | ||||
Corresponding_transcript | C05C8.7.1 | |||||
Corresponding_protein | CE07925 | |||||
Corresponding_PCR_product | cenix:12-c3 | |||||
mv_C05C8.7 | ||||||
sjj_C05C8.7 | ||||||
Corresponding_oligo_set (18) | ||||||
Matching_cDNA (117) | ||||||
RNAi_result (11) | ||||||
Microarray_results (22) | ||||||
Brief_identification | mannose-6-phosphate isomerase | Accession_evidence | UniProt | TR:O16315 | ||
RNASeq_FPKM (74) | ||||||
Remark | SL1 trans-spliced; see yk1011d08.5 | |||||
Associated_feature | WBsf000572 | |||||
WBsf014744 | ||||||
WBsf015683 | ||||||
Method | curated |