WormBase Tree Display for CDS: C04A2.3p
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| C04A2.3p | SMap | S_parent | Sequence | C04A2 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 165 | |||
| 218 | 445 | |||||
| 1020 | 1248 | |||||
| 1945 | 2140 | |||||
| 4897 | 6022 | |||||
| 6066 | 6575 | |||||
| 6626 | 6847 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A0K3AQX8 | ||
| UniProt | UniProtAcc | A0A0K3AQX8 | ||||
| AlphaFold | entry | A0A0K3AQX8 | ||||
| NCBI_protein | GI_number | GI:919005405 | ||||
| Protein_id | CHROMOSOME_II | CTQ86444 | 1 | |||
| DB_remark | EGL-27 protein; contains similarity to Pfam domain PF00320 (GATA zinc finger); contains similarity to Interpro domains IPR001005 (SANT/Myb domain), IPR000679 (Zinc finger, GATA-type), IPR009057 (Homeobox-like domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Visible | Gene | WBGene00001194 | ||||
| Corresponding_transcript | C04A2.3p.1 | |||||
| Corresponding_protein | CE50370 | |||||
| Corresponding_PCR_product | cenix:137-e4 | |||||
| cenix:202-g10 | ||||||
| mv_AAD27790 | ||||||
| sjj_C04A2.2 | ||||||
| Corresponding_oligo_set (21) | ||||||
| Matching_cDNA | male_Nanopore_Roach_127969 | |||||
| male_Nanopore_Roach_157626 | ||||||
| young_adult_Nanopore_Roach_106949 | ||||||
| L2_Nanopore_Roach_103828 | ||||||
| L2_Nanopore_Roach_104581 | ||||||
| adult_Nanopore_Roach_88096 | ||||||
| L2_Nanopore_Roach_84768 | ||||||
| L3_Nanopore_Roach_80183 | ||||||
| YA_Nanopore_Li_295244 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (66) | ||||||
| Microarray_results (28) | ||||||
| Brief_identification | GATA-type domain-containing protein | Accession_evidence | UniProt | TR:A0A0K3AQX8 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 07 Nov 2014 00:00:00 | WBPerson4025 | ||||
| Remark | [141107 gw3] Created this isoform based on the RNASeq splice data. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
