WormBase Tree Display for CDS: C04A2.3e
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| C04A2.3e | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C04A2 | |||
| Structure | Source_exons (13) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A0K3ATV0 | ||
| UniProt | UniProtAcc | A0A0K3ATV0 | ||||
| AlphaFold | entry | A0A0K3ATV0 | ||||
| NCBI_protein | GI_number | GI:919005395 | ||||
| Protein_id | CHROMOSOME_II | CTQ86433 | 1 | |||
| DB_remark | EGL-27 protein; contains similarity to Pfam domains PF00320 (GATA zinc finger), PF01426 (BAH domain), PF01448 (ELM2 domain); contains similarity to Interpro domains IPR001005 (SANT/Myb domain), IPR001025 (Bromo adjacent homology (BAH) domain), IPR000679 (Zinc finger, GATA-type), IPR000949 (ELM2 domain), IPR009057 (Homeobox-like domain superfamily), IPR043151 (Bromo adjacent homology (BAH) domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Visible | Gene | WBGene00001194 | ||||
| Corresponding_transcript | C04A2.3e.1 | |||||
| Corresponding_protein | CE27421 | |||||
| Corresponding_PCR_product | cenix:137-e4 | |||||
| cenix:202-g10 | ||||||
| mv_AAD27790 | ||||||
| mv_C04A2.3 | ||||||
| sjj_C04A2.2 | ||||||
| sjj_C04A2.3 | ||||||
| Corresponding_oligo_set (24) | ||||||
| Matching_cDNA (19) | ||||||
| RNAi_result (77) | ||||||
| Microarray_results (32) | ||||||
| Brief_identification | Egg-laying defective protein 27 | Accession_evidence | UniProt | TR:A0A0K3ATV0 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 07 Nov 2014 00:00:00 | WBPerson4025 | ||||
| Remark | [141107 gw3] Created this isoform based on the RNASeq splice data. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq | |||||
| Method | curated |
