WormBase Tree Display for CDS: B0244.8
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| B0244.8 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | B0244 | |||
| Structure | Source_exons | 1 | 53 | |||
| 100 | 181 | |||||
| 226 | 867 | |||||
| 912 | 1623 | |||||
| 1675 | 1841 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q09967 | ||
| UniProt | UniProtAcc | Q09967 | ||||
| UniProt_GCRP | UniProtAcc | Q09967 | ||||
| AlphaFold | entry | Q09967 | ||||
| NCBI_protein | GI_number | GI:351065536 | ||||
| TREEFAM | TREEFAM_ID | TF351699 | ||||
| Protein_id | CHROMOSOME_III | CCD61503 | 1 | |||
| DB_remark | EGG-1 protein; contains similarity to Pfam domain PF00057 (Low-density lipoprotein receptor domain class A); contains similarity to Interpro domains IPR002172 (Low-density lipoprotein (LDL) receptor class A repeat), IPR036055 (LDL receptor-like superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00015083 | ||||
| Corresponding_transcript | B0244.8.1 | |||||
| Corresponding_protein | CE32094 | |||||
| Corresponding_PCR_product | TH:314C3 | |||||
| WBPaper00038381:B0244_1_1 | ||||||
| cenix:137-f1 | ||||||
| cenix:314-c3 | ||||||
| mv_B0244.8 | ||||||
| sjj2_B0244.8 | ||||||
| sjj_B0244.8 | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA (56) | ||||||
| RNAi_result | WBRNAi00101828 | |||||
| WBRNAi00008031 | ||||||
| WBRNAi00022546 | ||||||
| WBRNAi00038799 | ||||||
| WBRNAi00000579 | ||||||
| WBRNAi00038800 | ||||||
| WBRNAi00005944 | ||||||
| WBRNAi00009632 | ||||||
| WBRNAi00092496 | ||||||
| WBRNAi00085813 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | LDL receptor repeat-containing protein egg-1 | Accession_evidence | UniProt | SP:Q09967 | ||
| RNASeq_FPKM (74) | ||||||
| Remark | [20021011 as] removed first exon (1139-1204) based on EST data (yk722g12.5) indicating transplicing | Curator_confirmed | WBPerson1850 | |||
| SL1 transpliced; see yk722g12.5 | ||||||
| Associated_feature | WBsf015936 | |||||
| Method | curated |
