WormBase Tree Display for CDS: F17E5.1a
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F17E5.1a | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F17E5 | |||
Structure | Source_exons (24) | |||||
DB_info | Database | SwissProt | UniProtAcc | P54936 | ||
UniProtIsoformAcc | P54936-1 | |||||
UniProt | UniProtAcc | P54936 | ||||
UniProt_GCRP | UniProtAcc | P54936 | ||||
AlphaFold | entry | P54936 | ||||
NCBI_protein | GI_number | GI:13548307 | ||||
Protein_id | CHROMOSOME_X | CAA90760 | 2 | |||
DB_remark | LIN-2 protein; contains similarity to Pfam domains PF00018 (SH3 domain), PF00069 (Protein kinase domain), PF00595 (PDZ domain), PF00625 (Guanylate kinase), PF02828 (L27 domain); contains similarity to Interpro domains IPR008145 (Guanylate kinase/L-type calcium channel beta subunit), IPR011009 (Protein kinase-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR014775 (L27 domain, C-terminal), IPR001452 (SH3 domain), IPR000719 (Protein kinase domain), IPR020635 (Tyrosine-protein kinase, catalytic domain), IPR004172 (L27 domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Accession_evidence | NDB | CB395393 | |||
Inferred_automatically | transcript_builder | |||||
Visible | Gene | WBGene00002991 | ||||
Corresponding_transcript | F17E5.1a.1 | |||||
Corresponding_protein | CE27131 | |||||
Corresponding_PCR_product (4) | ||||||
Corresponding_oligo_set (17) | ||||||
Matching_cDNA (20) | ||||||
RNAi_result | WBRNAi00013468 | |||||
WBRNAi00030265 | ||||||
WBRNAi00044888 | ||||||
WBRNAi00000540 | ||||||
WBRNAi00076312 | ||||||
Microarray_results | SMD_F17E5.1 | |||||
194033_s_at | ||||||
Aff_F17E5.1A | ||||||
GPL13394_WBGene00002991 | ||||||
GPL13914_F17E5.1 | ||||||
GPL14144_F17E5.1a_2139-2198_0.896_24_B | ||||||
GPL14144_F17E5.1a_2290-2349_0.855_42_C | ||||||
GPL14144_F17E5.1a_2401-2460_0.929_9_A | ||||||
GPL3518_CE27131 | ||||||
GPL3518_CE27132 | ||||||
GPL8304_CE_WBGene00002991_A | ||||||
GPL8673_F17E5_1aP01486 | ||||||
GPL8673_F17E5_1aP01710 | ||||||
GPL8673_F17E5_1aP01918 | ||||||
GPL8673_F17E5_1bP00463 | ||||||
GPL8673_F17E5_1bP00687 | ||||||
GPL8673_F17E5_1bP00895 | ||||||
GPL9450_F17E5.1a | ||||||
cea2.3.10367 | ||||||
cea2.d.02514 | ||||||
cea2.d.07860 | ||||||
Brief_identification | Protein lin-2 | Accession_evidence | UniProt | SP:P54936 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 31 Mar 2001 00:00:00 | WBPerson1846 | ||||
Remark | 951117: Splice sites for exon 16 - 17 utilise the rare GC..AG intron type | |||||
Annotated using Pfam | ||||||
[010330 dl] Modified prediction based on mRNA X92564 | Curator_confirmed | WBPerson1846 | ||||
Method | curated |